DR403837

Overview
NameDR403837
Unique NameDR403837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 1
Query:  151 LIERDCRVEICTQKKTILSVEDIIALIGDKCGGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 639
            ++E +  VE+   +K I    +I+     +   ++  L+E   + +F    +   +  +N AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +      W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY
Sbjct:   18 MLEDEFEVEVWGDEKEI--PREILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK-RAKGFNMRILYY 179          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 651
            K  +N   G+NNVD++ A +  I V NTP                   RRI E D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR   + F MN++Y   +Q
Sbjct:   69 KIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RAKAFDMNILYTGPHQ 179          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 651
            K  +N   G+NNVDV  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA A+   + F M+++Y   +Q
Sbjct:   68 KIIANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAK-RAKAFDMDILYTGPHQ 178          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
The following BLAST results are available for this feature:
BLAST of DR403837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GYAR_PYRHO1.887e-1430.54Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
Y606_STAS17.172e-1437.50Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
Y752_STAHJ2.087e-1337.50Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
Y2577_STAA82.087e-1337.38Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2389_STAAR2.087e-1337.38Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
Y2305_STAAM2.087e-1337.38Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2296_STAAC2.087e-1337.38Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA32.087e-1337.38Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW2.087e-1337.38Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS2.087e-1337.38Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G22 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403837 ID=DR403837; Name=DR403837; organism=Citrus sinensis; type=EST; length=651bp
GGGGACACNNNCTGTTTTTGGCACTTGGAACTTGAAACTGCCAACTTAGC
TTCAATGGCGAAGCCAGTTTCAATTGAAGTGTGGAACCCAAATGGAAAAT
ATAGAGTTGTTAGTACCAAGCCTATGCCTGGAACCCGCTGGATCAATCTC
TTAATCGAACGAGATTGCCGTGTTGAAATATGTACCCAGAAGAAAACTAT
ACTCTCTGTTGAAGATATCATTGCTTTGATTGGTGACAAGTGCGGTGGAG
TCATTGGACAGTTGACAGAGGACTGGGGAGAGACTTTGTTTGCTGCACTG
AGTAGGGCAGGAGGAAAGGCTTTTAGTAACATGGCTGTTGGTTACAACAA
TGTTGACGTTAATGCTGCTAACAAATATGGTATTGCTGTTGGAAACACTC
CTGGAGTACTTACTGAAACAACAGCAGAGTTAGCAGCTTCGCTCTCTCTA
GCGGCTGCAAGAAGAATTGTTGAAGCAGATGAGTTTATGAGAGCTGGCTT
ATACGATGGATGGCTTCCAAATCTATTCGTCGGGAACTTGCTCAAGGGAC
AGACTGTCGGTGTGATTGGAGCTGGTCGTATCGGATCTGCCTATGCTAGA
ATGATGGTTGAAGGGTTCAAAATGAACCTCATTTACTATGATCTTTACCA
A
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