DR403837

Overview
NameDR403837
Unique NameDR403837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+T+G+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 39/107 (36.45%), Postives = 52/107 (48.60%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+DV  A +  I V NTP                   RRIVE D   R   +DGW P  F G  + G+T+G+IG G IG A A+     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAK-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 39/107 (36.45%), Postives = 52/107 (48.60%), Query Frame = 1
Query:  316 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 636
            K  +N   G+NN+DV  A +  I V NTP                   RRIVE D   R   +DGW P  F G  + G+T+G+IG G IG A A+     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAK-RARAFDMDVLY 173          
BLAST of DR403837 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 48/169 (28.40%), Postives = 70/169 (41.42%), Query Frame = 1
Query:  211 EDIIALIGDKCGGVIGQLTEDWGETLFAALSRAGG----------------------KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 651
            E+I A IG+ C   + Q      + LF  L  A G                      K  SN +VGY+N D+ A  + G+   +TP                   RR+ E D F+RAG +         G  +  QT+G+IG GRIG   AR    GF M ++Y++ ++
Sbjct:   14 EEIEAFIGEHCRYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHR 182          
The following BLAST results are available for this feature:
BLAST of DR403837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
Y2178_STAAB2.087e-1337.38Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]
Y2098_STAAN2.087e-1337.38Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]
Y1888_STAEQ1.353e-1236.45Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
Y1879_STAES1.353e-1236.45Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]
TKRA_BACSU9.693e-1128.40Probable 2-ketogluconate reductase OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G22 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403837 ID=DR403837; Name=DR403837; organism=Citrus sinensis; type=EST; length=651bp
GGGGACACNNNCTGTTTTTGGCACTTGGAACTTGAAACTGCCAACTTAGC
TTCAATGGCGAAGCCAGTTTCAATTGAAGTGTGGAACCCAAATGGAAAAT
ATAGAGTTGTTAGTACCAAGCCTATGCCTGGAACCCGCTGGATCAATCTC
TTAATCGAACGAGATTGCCGTGTTGAAATATGTACCCAGAAGAAAACTAT
ACTCTCTGTTGAAGATATCATTGCTTTGATTGGTGACAAGTGCGGTGGAG
TCATTGGACAGTTGACAGAGGACTGGGGAGAGACTTTGTTTGCTGCACTG
AGTAGGGCAGGAGGAAAGGCTTTTAGTAACATGGCTGTTGGTTACAACAA
TGTTGACGTTAATGCTGCTAACAAATATGGTATTGCTGTTGGAAACACTC
CTGGAGTACTTACTGAAACAACAGCAGAGTTAGCAGCTTCGCTCTCTCTA
GCGGCTGCAAGAAGAATTGTTGAAGCAGATGAGTTTATGAGAGCTGGCTT
ATACGATGGATGGCTTCCAAATCTATTCGTCGGGAACTTGCTCAAGGGAC
AGACTGTCGGTGTGATTGGAGCTGGTCGTATCGGATCTGCCTATGCTAGA
ATGATGGTTGAAGGGTTCAAAATGAACCTCATTTACTATGATCTTTACCA
A
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