DR403830

Overview
NameDR403830
Unique NameDR403830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403830 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  123 ALSFSPADDYLIDCGSTVD--TTVDNRLFISDSSRASSHLLTFSTRSKSIQLSHRNGKLPEI-YNSARVFDRPSRYIFKIRDKGTHMVRLHFYQLNSSQFVSDDAQFHVLVNGYVVLSNFSVGNIIASAS----VKEYLIWINAEKLVIAFLP--TMKSKFAFVNAIEVISAP 614
            A  +SP +  L++CG      T  DNR++ISD    S  L + S  SK+     ++  +PE+ Y +ARVF  P  Y F +   G   VRL+FY  +     + ++ F V    Y +L NFS      + +    +KE+++ +    L + F P     + +AFVN IEV S P
Sbjct:   27 AADYSPTEKILLNCGGGASNLTDTDNRIWISDVK--SKFLSSSSEDSKTSPALTQDPSVPEVPYMTARVFRSPFTYTFPVA-SGRKFVRLYFYPNSYDGLNATNSLFSVSFGPYTLLKNFSASQTAEALTYAFIIKEFVVNVEGGTLNMTFTPESAPSNAYAFVNGIEVTSMP 196          
BLAST of DR403830 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 53/175 (30.29%), Postives = 93/175 (53.14%), Query Frame = 3
Query:  117 GIALSFSPADDYLIDCGSTVDTT-VDNRLFISDSSRASSHLLTFSTRSKSIQLSHRNGKLPEI-YNSARVFDRPSRYIFKIRDKGTHMVRLHFYQLN-SSQFVSDDAQFHVLVNGYVVLSNFSVGNIIASAS------VKEYLIWINAEKLVIAFLPTMKSKFAFVNAIEVISAP 614
            G   ++ P D +L +CG T +   V  R + +++ +  S  L     S + Q S++   + +I Y +AR+F     Y F +   G++ +RL+FY     SQF +  + F V VNG+ +L+NFS    + ++       +KE++I +  + L + F P++ S  AFVN IE++S P
Sbjct:   21 GATSTYEPTDVFLFNCGDTSNNVDVSGRNWTAENQKILSSNLV--NASFTAQASYQESGVSQIPYMTARIFRSEFTYSFPVTP-GSNFLRLYFYPTRYGSQFNAVKSFFSVKVNGFTLLNNFSADLTVKASKPQTEFIIKEFIIPV-YQTLNLTFTPSLDS-LAFVNGIEIVSIP 190          
BLAST of DR403830 vs. ExPASy Swiss-Prot
Match: Y5392_ARATH (Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 52/176 (29.55%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  117 GIALSFSPADDYLIDCGSTVDTTVDN---RLFISDSSRASSHLLTFSTRSKSIQLSHRNGKLPEIYNSARVFDRPSRYIFKIRDKGTHMVRLHFYQLN-SSQFVSDDAQFHVLVNGYVVLSNFSVGNII------ASASVKEYLIWINAEKLVIAFLPTMKSKFAFVNAIEVISAP 614
            G+  ++ P D +L +CG T    VDN      +      SS+L+  S  S++        ++P  Y  AR+F     Y F +   G+  +RL+FY     S F + ++ F V VNG+ +L NF+  + +      +++ +KE++I ++ + L + F P+ K+  AFVN IE++S P
Sbjct:   18 GVTAAYHPTDVFLFNCGDT-SNNVDNSGRNWTVESRQILSSNLVNASFTSEASYQKAGVSRIP--YMKARIFRSEFTYSFPV-TPGSIFLRLYFYPTQYKSGFDAVNSFFSVKVNGFTLLRNFNADSTVQASIPLSNSLIKEFIIPVH-QTLNLTFTPS-KNLLAFVNGIEIVSMP 187          
The following BLAST results are available for this feature:
BLAST of DR403830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FERON_ARATH5.379e-1331.79Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
Y5900_ARATH1.730e-1130.29Putative receptor-like protein kinase At5g39000 OS... [more]
Y5392_ARATH8.587e-1129.55Probable receptor-like protein kinase At5g39020 OS... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403830 ID=DR403830; Name=DR403830; organism=Citrus sinensis; type=EST; length=707bp
GGGGATTCATCTAATCTCATCTCAGTTCTTCAACTAGCTTTTGTTTGTAT
CTAATGGAGAATCTGCGCAAAAACCAAGCTTTGTTTCTCTTATTACTGTC
TCTATCATCTTTCTATGGTATTGCTCTCTCTTTCTCTCCAGCCGATGACT
ACCTCATTGACTGCGGTTCCACCGTGGACACCACCGTAGACAATCGCCTC
TTCATTTCCGACTCCTCCCGCGCCAGCTCGCATCTCTTGACCTTCTCAAC
TCGGTCAAAATCGATCCAACTTAGTCACCGAAATGGTAAATTACCTGAAA
TTTATAACTCAGCAAGGGTTTTCGATAGACCATCGAGGTATATTTTCAAG
ATCAGAGACAAGGGAACCCACATGGTACGCCTACACTTCTATCAATTAAA
TTCGTCTCAATTTGTTTCAGATGATGCTCAATTTCACGTTTTGGTTAATG
GATATGTTGTTTTGAGCAATTTTAGTGTTGGTAATATAATTGCAAGTGCT
AGTGTTAAGGAGTATCTTATCTGGATTAATGCTGAAAAGCTTGTAATTGC
GTTTTTGCCCACTATGAAATCGAAATTTGCATTTGTTAATGCCATTGAAG
TGATATCCGCACCTAAAGATTTGATTTTGGATACTGCCAAGTTTGTCAAT
GGCGATAAAATTGACAACTTTGATGCGCTAAGTAAACAAGCGCTTGAAGT
TATGTAT
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