DR403829

Overview
NameDR403829
Unique NameDR403829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.165e-58
Identity = 109/195 (55.90%), Postives = 133/195 (68.21%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQ-VSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 694
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FPGFG SG+   RKREIAAFF QT HETTGGW  AP G YAWGYC++R+  +P                   GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVII 250          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 108/183 (59.02%), Postives = 127/183 (69.40%), Query Frame = 2
Query:  155 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGG--WTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXX-GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 694
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF  QT HETTGG  W  AP G YAWGYCY R+++P SS                 GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVII 224          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 108/183 (59.02%), Postives = 127/183 (69.40%), Query Frame = 2
Query:  155 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGG--WTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXX-GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 694
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF  QT HETTGG  W  AP G YAWGYCY R+++P SS                 GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVII 246          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.969e-57
Identity = 110/192 (57.29%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FPGFG +G+ T RKREIAAFF QT HETTGGW  AP G YAWGYC++R Q SP                   GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVI 239          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.018e-56
Identity = 104/183 (56.83%), Postives = 124/183 (67.76%), Query Frame = 2
Query:  143 GERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            G  D G   D G L  II +  F+ LL +RNDARCPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HETTGGW DAP G YAWGYCY+++++                    GRGPIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVI 258          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.268e-56
Identity = 105/178 (58.99%), Postives = 125/178 (70.22%), Query Frame = 2
Query:  164 GTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FPGFG +G+ T RKREIAAFF QT HETTGGW  AP G YAWGYC++R Q SP                   GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVI 237          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.963e-56
Identity = 108/192 (56.25%), Postives = 129/192 (67.19%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FPGFG +G+ T RKREIAAF  QT HETTGGW  AP G YAWGYC++R Q SP                   GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:   53 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVI 243          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.869e-56
Identity = 99/169 (58.58%), Postives = 126/169 (74.56%), Query Frame = 2
Query:  188 KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS-DXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AA++FP FG +G+  +RKRE+AAF  QT HETTGGW  AP G YAWGYC++++ +P+S+                 GRGP+QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVL 172          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.600e-56
Identity = 104/190 (54.74%), Postives = 130/190 (68.42%), Query Frame = 2
Query:  125 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQV-SPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            G G   G    G G  GG +  ++S+E+FE LL +RNDA CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++ + AS                 GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVI 256          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.600e-56
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = 2
Query:  164 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F GFG +G+ T RKRE+AAFF QT HETTGGW  AP G YAWGYCY+R Q +P S                 GRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVI 255          
The following BLAST results are available for this feature:
BLAST of DR403829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_SOLTU3.165e-5855.90Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_GOSHI4.571e-5759.02Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI4.571e-5759.02Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_SOLTU5.969e-5757.29Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI6_POPTR1.018e-5656.83Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_SOLTU2.268e-5658.99Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC2.963e-5656.25Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIT_CARPA3.869e-5658.58Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI9_ORYSJ6.600e-5654.74Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC6.600e-5657.63Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G13 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403829 ID=DR403829; Name=DR403829; organism=Citrus sinensis; type=EST; length=700bp
GGGGGACACCAAGTAAAGGCATTATTGATATCATAACTCTTGCTTTCAAA
TNNNNNNNNTTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTA
CTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACG
TGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCCCT
GCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTT
TCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTG
CTGCCTTTTTTGTCCAAACTGGCCATGAAACTACTGGGGGATGGACCGAT
GCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAG
CCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAG
GGCAATACTGTGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTAC
TTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCT
ACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGA
TGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAA
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