DR403829

Overview
NameDR403829
Unique NameDR403829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.126e-55
Identity = 108/192 (56.25%), Postives = 128/192 (66.67%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FPGFG +G+ T RKREIAAF  QT HETTGGW  AP G YAWGYC++R Q SP                   GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVI 239          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 101/178 (56.74%), Postives = 120/178 (67.42%), Query Frame = 2
Query:  164 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD--XXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF  QT HETTGGW  AP G +AWGYC+ +Q   ASSD                 GRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVI 195          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 205.297 bits (521), Expect = 2.595e-52
Identity = 106/207 (51.21%), Postives = 130/207 (62.80%), Query Frame = 2
Query:  107 GSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD--XXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF  QT HETTGGW  AP G +AWGYC+ +Q   A+S+                 GRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVI 247          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52
Identity = 99/175 (56.57%), Postives = 121/175 (69.14%), Query Frame = 2
Query:  173 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD--XXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF  QT HETTGGW  AP G +AWGYC+ +Q   A+S+                 GRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVI 250          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.551e-52
Identity = 91/175 (52.00%), Postives = 119/175 (68.00%), Query Frame = 2
Query:  167 TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F GFG +G++  +K+E+AAF  QT HETTGGW  AP G YAWGYC++ + +                    GRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVI 249          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.551e-52
Identity = 99/178 (55.62%), Postives = 120/178 (67.42%), Query Frame = 2
Query:  164 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD--XXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF  QT HETTGGW  AP G +AWGYC+ +Q   A++D                 GRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVI 195          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 94/173 (54.34%), Postives = 122/173 (70.52%), Query Frame = 2
Query:  182 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDE 700
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++P+                  GRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSD-------------PPYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQ 185          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 103/201 (51.24%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS-DXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFP FG +GN   RKRE+AAF  QT HETTGGW  AP G ++WGYC+ ++ +P S                  GRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVI 259          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50
Identity = 97/181 (53.59%), Postives = 123/181 (67.96%), Query Frame = 2
Query:  164 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDE 700
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYC++RQ+  +                  GRGPIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD--------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQ 183          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.206e-49
Identity = 92/171 (53.80%), Postives = 115/171 (67.25%), Query Frame = 2
Query:  182 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF  QT HETTGGW  AP G Y+WGYCY R Q SP                   GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVI 175          
The following BLAST results are available for this feature:
BLAST of DR403829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_SOLTU1.126e-5556.25Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_HORVU1.522e-5256.7426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU2.595e-5251.2126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE3.390e-5256.57Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIX_PEA7.551e-5252.00Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIC_SECCE7.551e-5255.62Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI11_ORYSJ2.197e-5154.34Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_ORYSJ2.870e-5151.24Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLCI2.429e-5053.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHID_SOLLC1.206e-4953.80Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G13 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403829 ID=DR403829; Name=DR403829; organism=Citrus sinensis; type=EST; length=700bp
GGGGGACACCAAGTAAAGGCATTATTGATATCATAACTCTTGCTTTCAAA
TNNNNNNNNTTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTA
CTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACG
TGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCCCT
GCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTT
TCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTG
CTGCCTTTTTTGTCCAAACTGGCCATGAAACTACTGGGGGATGGACCGAT
GCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAG
CCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAG
GGCAATACTGTGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTAC
TTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCT
ACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGA
TGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAA
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