DR403829

Overview
NameDR403829
Unique NameDR403829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.686e-43
Identity = 89/191 (46.60%), Postives = 109/191 (57.07%), Query Frame = 2
Query:  125 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 697
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HET G W  A G +Y WGYC++                                 N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI +
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITE 223          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.745e-40
Identity = 79/170 (46.47%), Postives = 104/170 (61.18%), Query Frame = 2
Query:  197 SREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS-DXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDE 700
            +  MFE +LP RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFF QT  ET+G         + WGYC + +++P S                  GRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  E
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGE 237          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.745e-40
Identity = 84/178 (47.19%), Postives = 113/178 (63.48%), Query Frame = 2
Query:  173 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD--XXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVI 691
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF  QT H T+       GG Y+WGYCY ++V  A+SD                  RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVV 261          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.745e-40
Identity = 84/178 (47.19%), Postives = 113/178 (63.48%), Query Frame = 2
Query:  173 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD--XXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVI 691
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF  QT H T+       GG Y+WGYCY ++V  A+SD                  RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVV 261          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.752e-38
Identity = 81/170 (47.65%), Postives = 105/170 (61.76%), Query Frame = 2
Query:  182 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 691
            +  +IS  +FE +L +R        GFYTYDAFI AA++FP F  +G+  +RKRE+AAF  QT HETTGGW  AP G Y  G         ++SD               GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSDYF-------------GRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVI 140          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.095e-34
Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = 2
Query:  155 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 697
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF       T+G  +D     +AWG C+I   +   +D                 RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH+++++
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN 299          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 65/179 (36.31%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 649
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P FG +G+    KREIAAFF    HET               +CYI ++   S    D               GRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 65/178 (36.52%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  122 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 652
            CG G   G   D   G     +  I+++E F D +  +  A CP + FYT   F+EA  A+PGFG    +  RKREIAA+F    HET           +A  YC   Q  P + +               GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYF-----------GRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 64/189 (33.86%), Postives = 96/189 (50.79%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXG---RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP 667
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  F    HET               +CYI +++ AS D               G   RGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 70/191 (36.65%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  119 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTG-GWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 655
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +  A CP + FYT  AF+ A    P FGN G+    KREIAAFF    HETT     +   G+    YC                          GRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYC---------DQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
The following BLAST results are available for this feature:
BLAST of DR403829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_POPTR1.686e-4346.60Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI8_POPTR1.745e-4046.47Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.745e-4047.19Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.745e-4047.19Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA4.752e-3847.65Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.095e-3437.91Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ4.173e-2636.31Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA7.869e-2536.52Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA1.028e-2433.86Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIP_BETVU6.662e-2436.65Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G13 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403829 ID=DR403829; Name=DR403829; organism=Citrus sinensis; type=EST; length=700bp
GGGGGACACCAAGTAAAGGCATTATTGATATCATAACTCTTGCTTTCAAA
TNNNNNNNNTTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTA
CTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACG
TGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCCCT
GCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTT
TCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTG
CTGCCTTTTTTGTCCAAACTGGCCATGAAACTACTGGGGGATGGACCGAT
GCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAG
CCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAG
GGCAATACTGTGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTAC
TTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCT
ACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGA
TGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAA
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