DR403829

Overview
NameDR403829
Unique NameDR403829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 61/188 (32.45%), Postives = 93/188 (49.47%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTA 658
            CG G   G   +G G  G       +  +++   F  +   +N A   C  + FYT  AF+ A + +PGF + G++   KREIAAFF    HET               +CYI +++ +++  D               GRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM +
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI---KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 60/180 (33.33%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  125 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXXXXXXXGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 652
            G G   G    G G+ G  +  +++   F  +   +N A   C  + FYT  AF+ A  A+PGF + G E   KREIAAFF    HET               +CYI +++ +++  D               GRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI---KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 61/181 (33.70%), Postives = 85/181 (46.96%), Query Frame = 2
Query:  125 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXX---GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 652
            G G   G    G G  G  +  +++   F  +   +N A   C  + FYT  +F+ AA ++ GF         KREIAAFF    HET                CYI +++ AS D                  GRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM
Sbjct:   68 GGGGGGGGGGGGGGGSGVSVESVVTEAFFNGI---KNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 59/185 (31.89%), Postives = 84/185 (45.41%), Query Frame = 2
Query:  107 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXX---GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 652
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++ GF N       KREIAAFF    HET                CYI +++ A+ D                  GRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of DR403829 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 61/181 (33.70%), Postives = 83/181 (45.86%), Query Frame = 2
Query:  122 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFVQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXXXXXXX----GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 652
            CG+G   G   T        +   I    F + +  + D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA F    HET               +CYI ++  AS D                   GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of DR403829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_MAIZE1.484e-2332.45Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE1.641e-2233.33Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ2.369e-2133.70Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ4.041e-2131.89Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.620e-2033.70Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G13 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403829 ID=DR403829; Name=DR403829; organism=Citrus sinensis; type=EST; length=700bp
GGGGGACACCAAGTAAAGGCATTATTGATATCATAACTCTTGCTTTCAAA
TNNNNNNNNTTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTA
CTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACG
TGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCCCT
GCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTT
TCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTG
CTGCCTTTTTTGTCCAAACTGGCCATGAAACTACTGGGGGATGGACCGAT
GCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAG
CCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAG
GGCAATACTGTGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTAC
TTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCT
ACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGA
TGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAA
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