DR403828

Overview
NameDR403828
Unique NameDR403828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.037e-65
Identity = 105/128 (82.03%), Postives = 112/128 (87.50%), Query Frame = 2
Query:  305 IGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IGYK QTD  A   D  C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVKAFQ +Y+ RYGGGAN LA GYS G GLAAEIIGTFVLVYTV
Sbjct:   63 IGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLAAGYSKGTGLAAEIIGTFVLVYTV 190          

HSP 2 Score: 61.6178 bits (148), Expect = 2.037e-65
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  160 GSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            G ++AKDYTDPPP PL DA EL  WS YRA+IAEFI   L L
Sbjct:   14 GEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFL 55          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.464e-65
Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 2
Query:  305 IGYKSQTDP-AKNVDG-CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IGYK QTD  A   D  C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVKAFQ +Y+ RYGGGAN LA GYS G GL AEIIGTFVLVYTV
Sbjct:   63 IGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTV 190          

HSP 2 Score: 62.003 bits (149), Expect = 3.464e-65
Identity = 32/55 (58.18%), Postives = 36/55 (65.45%), Query Frame = 1
Query:  130 MAKDTGV---AEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            M KD  +   A  G ++AKDYTDPPP PL DA EL  WS YRA+IAEFI   L L
Sbjct:    1 MGKDDVIESGAGGGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFL 55          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.465e-65
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IGYK QTD A +     C GVG+LGIAWAFGGMIF+LVYCTAG+SGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGAI GVGLVK FQ ++Y RYGGGANEL+ GYS G GLAAEIIGTFVLVYTV
Sbjct:   58 IGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTV 185          

HSP 2 Score: 62.003 bits (149), Expect = 3.465e-65
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1
Query:  130 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            MAKD   A   ++  KDY+DPPP PL DA ELTKWS YRA+IAEF+   L L
Sbjct:    1 MAKDIEAA--AAHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFL 50          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.856e-63
Identity = 104/128 (81.25%), Postives = 109/128 (85.16%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IGYK QTD A N     C GVG+LGIAWAFGGMIF+LVYCTAG+SGGHINPAVT GLFLARKVSLVRA++YM AQCLGAI GV LVK FQ S Y RYGGGANELA GYSTG GLAAEIIGTFVLVYTV
Sbjct:   60 IGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTV 187          

HSP 2 Score: 56.9954 bits (136), Expect = 1.856e-63
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1
Query:  130 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            M K+  V+   +  A+DY DPPP PL D  EL KWS YRALIAEF+   L L
Sbjct:    1 MGKEVDVSTLEAGGARDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFL 52          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.115e-63
Identity = 96/129 (74.42%), Postives = 106/129 (82.17%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVDG---CAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IGYK Q+D    + G   C GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSLVRA++YM+AQC GAI G GL K FQKS+Y RYGGG N ++DGY+ G  L AEIIGTFVLVYTV
Sbjct:   61 IGYKRQSDT--KIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTV 187          

HSP 2 Score: 68.1662 bits (165), Expect = 4.115e-63
Identity = 36/53 (67.92%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  130 MAKDTG-VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            MAKD   V E G YSAKDY DPPP PL D  ELTKWS YRA IAEFI   L L
Sbjct:    1 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFL 53          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 9.123e-63
Identity = 100/126 (79.37%), Postives = 108/126 (85.71%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IG+KSQTD       CA VG+LGI+WAFGGMIF+LVYCTAGISGGHINPAVTFGLFLA KVSLVRAV YMVAQCLGA  GVGLVK FQ +YY RYGGGAN L+DGY+ GVG+ AEIIGTFVLVYTV
Sbjct:   59 IGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGANMLSDGYNVGVGVGAEIIGTFVLVYTV 184          

HSP 2 Score: 56.6102 bits (135), Expect = 9.123e-63
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 1
Query:  130 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            M KD  + E  S S KDY DPPP   F+  EL KWSFYRA+IAEFI   L L
Sbjct:    1 MTKDE-LTEEESLSGKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFL 51          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.023e-62
Identity = 103/128 (80.47%), Postives = 112/128 (87.50%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IGYK QTD + + D   C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++Y+VAQCLGA+ GV LVK FQ S+Y RYGGGANELA GYS G GLAAEIIGTFVLVYTV
Sbjct:   57 IGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTV 184          

HSP 2 Score: 50.8322 bits (120), Expect = 2.023e-62
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  130 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            M K+  V   G    +DY DPPP PL D  EL +WS YRA+IAEF+   L L
Sbjct:    1 MGKEADVEAGG---VRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFL 49          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.296e-61
Identity = 101/128 (78.91%), Postives = 110/128 (85.94%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVD--GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IGYK QTD + +     C+GVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLVRA++YM AQ LGAI GV LVK FQ  +Y RYGGGANE++ GYSTG GLAAEIIGTFVLVYTV
Sbjct:   62 IGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTV 189          

HSP 2 Score: 55.4546 bits (132), Expect = 1.296e-61
Identity = 26/49 (53.06%), Postives = 29/49 (59.18%), Query Frame = 1
Query:  139 DTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            D    E G    +DY DPPP PL D  EL KWS YRA+IAEF+   L L
Sbjct:    6 DVSTLEAGGVRDRDYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFL 54          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.412e-60
Identity = 101/126 (80.16%), Postives = 106/126 (84.13%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IG+K+QT P      C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL RAV YMVAQCLGAI GVGLVKAF  + Y R GGGAN +ADGYSTG  L AEIIGTFVLVYTV
Sbjct:   57 IGHKNQTGP------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTV 176          

HSP 2 Score: 56.6102 bits (135), Expect = 1.412e-60
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 1
Query:  148 VAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            V+E G +  KDY DPPP PL D  EL  WSFYRA+IAEFI   L L
Sbjct:    5 VSEEGRHG-KDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFL 49          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 2.005e-59
Identity = 98/126 (77.78%), Postives = 104/126 (82.54%), Query Frame = 2
Query:  305 IGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IG+K QT P      C GVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRA+ YM+AQCLGAI GVG VKAF K+ Y   GGGAN +ADGYS G  L AEIIGTFVLVYTV
Sbjct:   59 IGHKKQTGP------CDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTV 178          

HSP 2 Score: 57.3806 bits (137), Expect = 2.005e-59
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 1
Query:  148 VAEHG-SYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFINPALSL 285
            V+E G ++  KDY DPPP PL D  EL  WSFYRALIAEFI   L L
Sbjct:    5 VSEEGKTHHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFL 51          
The following BLAST results are available for this feature:
BLAST of DR403828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PIP21_ORYSJ2.037e-6582.03Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE3.464e-6582.03Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_MAIZE3.465e-6579.69Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP24_ORYSJ1.856e-6381.25Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP27_MAIZE4.115e-6374.42Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP26_ARATH9.123e-6379.37Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ2.023e-6280.47Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP26_MAIZE1.296e-6178.91Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP28_ARATH1.412e-6080.16Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH2.005e-5977.78Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403828 ID=DR403828; Name=DR403828; organism=Citrus sinensis; type=EST; length=684bp
CGGCCGGGGAGCAAAAAAAAAGAAAAATNNNNAAGAAAAAGGAAAAGGCT
TCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTT
CTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTG
GCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGA
GCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCT
TGATAGCTGAGTTCATCAACCCTGCTCTTTCTTTACGTCACTGTCTTGAC
TGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCT
GTGCTGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATC
TTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCC
GGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTG
CTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGG
TTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGC
CAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCCGAGA
TCATCGGCACCTTTGTCTTGGTTTACACTGTCTT
back to top