DR403828

Overview
NameDR403828
Unique NameDR403828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 36/116 (31.03%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  356 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV-------KAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            G+G+LG+A+AFG  +  + +    ISG H+NPAV+FGL +  +      + Y++AQ +GAI   G++         F+ S      G A+    GY+ G G  +E++ T + +  +
Sbjct:   34 GIGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVI 149          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  365 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IL IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+VAQ +GAI+G G++         R     N L +  + G  +  E+I TF L   +
Sbjct:   42 ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPG-NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCI 146          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  344 DGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            DG A   G++  + A    +FV V   A ISGGH+NPAV FG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G   G  L  EI+ TF LVYTV
Sbjct:   50 DGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTV 157          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  365 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            +L I+ AFG  I  +      +SGGH+NPA+T  L +  ++SL+RAV Y+VAQ +GAI+G  ++      Y  R     N L +  + G  + AE+I TF L   V
Sbjct:   42 VLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGL-APYNARSNLAVNALNNNTTAGQAVVAEMILTFQLALCV 146          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  362 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LVYTV
Sbjct:   55 GLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGA-----SVACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTV 156          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  356 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGT--FVLV 673
            G+G+LG+++AFG  +  + Y   GISGGH NPAV+ GL +A ++     V Y++AQ  GAI+   +  V A  K+ +   G  AN   +    GYS    L  E++ T  F+L+
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLI 146          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  356 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGT--FVLV 673
            G+G LG+A AFG  +  + Y   GISGGH NPAV+  L +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T  F+++
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIII 146          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 2.869e-11
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  362 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            G+LG A AFG     LV     +SGGHINPA+T    LA ++SL RA+ Y++AQ LGA++G G++     +   R   G + L      G G   E++ T   +  V
Sbjct:   40 GVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPA-AVRGTLGLSALHPSVGPGQGTVVELLLTAQFILCV 145          

HSP 2 Score: 23.483 bits (49), Expect = 2.869e-11
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  220 ELTKWSFYRALIAEFINPAL 279
            EL   SF+RA++AEF+   L
Sbjct:    3 ELRSSSFWRAILAEFLGSLL 22          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 44/111 (39.64%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  362 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGV----GLAAEIIGTFVLVYTV 682
            G++ IA A    +FV V   A ISGGH+NPAVT GL +   ++L+    Y +AQCLG+I     V      + T    G +    G S G+    G+  EI+ TF LVYTV
Sbjct:   55 GLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSI-----VACLLLVFVT---NGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTV 157          
BLAST of DR403828 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  365 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 682
            IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI+G G++  +      R     N L +  + G  +  E+I TF L   +
Sbjct:   42 ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL-YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCI 146          
The following BLAST results are available for this feature:
BLAST of DR403828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
AQPZ_PSEPK4.255e-1231.03Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
AQP5_PIG4.255e-1239.62Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
TIP1_MEDSA5.557e-1239.47Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQP5_SHEEP5.557e-1237.74Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
TIP23_MAIZE7.257e-1241.12Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQPZ1_RHIME2.112e-1136.84Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
AQPZ_BRUSU2.758e-1140.35Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
MIP_CHICK2.869e-1137.38Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP23_ARATH3.602e-1139.64Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
AQP5_RAT3.602e-1137.74Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246G12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403828 ID=DR403828; Name=DR403828; organism=Citrus sinensis; type=EST; length=684bp
CGGCCGGGGAGCAAAAAAAAAGAAAAATNNNNAAGAAAAAGGAAAAGGCT
TCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTT
CTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTG
GCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGA
GCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCT
TGATAGCTGAGTTCATCAACCCTGCTCTTTCTTTACGTCACTGTCTTGAC
TGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCT
GTGCTGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATC
TTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCC
GGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTG
CTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTTGGG
TTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGC
CAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCCGAGA
TCATCGGCACCTTTGTCTTGGTTTACACTGTCTT
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