CX069391

Overview
NameCX069391
Unique NameCX069391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 3.207e-118
Identity = 201/238 (84.45%), Postives = 216/238 (90.76%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREI+H+QGGQCGNQIG+KFWEVV DEHGIDPTG  +G SDLQLER+NVY+NEA+  R+VPRA+LMDLEPGTMDSVR+GPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP+FGDLNHLISA MSG+TC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTALGDSDLQLERINVYFNEATGSRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 9.332e-118
Identity = 201/238 (84.45%), Postives = 212/238 (89.08%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREILH+QGGQCGNQIG+KFWEV+C EHG+D TG Y G S  QLER+NVYYNEA  GR+VPRAVLMDLEPGTM+S+R GP+G IFRPDNFV+GQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLISATMSGVTC
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSGVSPQQLERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.079e-117
Identity = 205/238 (86.13%), Postives = 212/238 (89.08%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREILHVQGGQCGNQIG+KFWEVVC EHGIDPTG Y G S+ QLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVR+G YGQIFRPDNFVFGQSGAGNNWAKG YTEGAELID+VL VVRKEAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVF SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI  RTLKL TP+FGDLNHLISATMSGVTC
Sbjct:    1 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYRGDSETQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGHYGQIFRPDNFVFGQSGAGNNWAKGXYTEGAELIDSVLAVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFASPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIXLRTLKLVTPTFGDLNHLISATMSGVTC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 421.009 bits (1081), Expect = 3.546e-117
Identity = 202/240 (84.17%), Postives = 214/240 (89.17%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSD--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREILH+QGGQCGNQIG+KFWEV+C EH +D TGRY GTS   L+LER+NVYYNEA  GR+VPRAVLMDLEPGTM+S+R GP+G IFRPDNFV+GQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLISATMSGVTC
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHCVDSTGRYSGTSSQQLELERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTC 240          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 6.049e-117
Identity = 200/238 (84.03%), Postives = 211/238 (88.66%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREILHVQ GQCGNQIG KFWEVV DEHGIDP G Y+GTS +QLERVNVYYNEAS GR+VPRAVLMDLEPGTMDS+RTGP+GQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAENC CLQGFQ+CH              ISKI+EEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEN DECMVLDNEALYDICFRTLKLT PSFGDLN LIS TMSG TC
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVVSDEHGIDPKGNYVGTSRVQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPHGQLFRPDNFIFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCACLQGFQICHSLGGGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGATC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 1.760e-116
Identity = 200/238 (84.03%), Postives = 211/238 (88.66%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREILHVQ GQCGNQIG KFWEV+CDEHGID TG Y+G   LQLERVNVYYNEAS GR+VPRAVLMDLEPGTMDS+R+GP+G+IFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQ+CH              ISKIREEYPDRMMLTFSVF  P+ SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLIS TMSGVTC
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 1.141e-115
Identity = 195/238 (81.93%), Postives = 212/238 (89.08%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREI+H+Q GQCGNQIG+KFWEV+ DEHG+DPTG Y G SDLQLER+NVYYNEA+ GR+VPRA+LMDLEPGTMDSVR GPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRTLKLTTP+FGDLNHL+S  MSGVTC
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSIVMSGVTC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 1.490e-115
Identity = 194/238 (81.51%), Postives = 213/238 (89.50%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREI+H+QGGQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ GR+VPRA+LMDLEPGTMDSVR GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRTLKLTTP++GDLNHL+SA MSGVTC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 1.490e-115
Identity = 194/238 (81.51%), Postives = 213/238 (89.50%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREI+H+QGGQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ GR+VPRA+LMDLEPGTMDSVR GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRTLKLTTP++GDLNHL+SA MSGVTC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTC 238          
BLAST of CX069391 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.946e-115
Identity = 194/238 (81.51%), Postives = 213/238 (89.50%), Query Frame = 1
Query:   55 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 768
            MREI+HVQGGQCGNQIG+KFWEV+ DEHG+DPTG Y G SDLQLER+NVYYNEA+ GR+VPRAVLMDLEPGTMDSVR GPYGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAE CDCLQGFQ+ H              I+K+REEYPDRMM T+SVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRTLKLTTP++GDLNHL+SA +SGVTC
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSMGGGTGSGMGTLLIAKVREEYPDRMMCTYSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTC 238          
The following BLAST results are available for this feature:
BLAST of CX069391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBB_POLAG3.207e-11884.45Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB3_MAIZE9.332e-11884.45Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB1_ANEPH2.079e-11786.13Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB4_MAIZE3.546e-11784.17Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB7_GOSHI6.049e-11784.03Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB1_SOYBN1.760e-11684.03Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB_NAEGR1.141e-11581.93Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB_TETTH1.490e-11581.51Tubulin beta chain OS=Tetrahymena thermophila GN=B... [more]
TBB1_PARTE1.490e-11581.51Tubulin beta chain OS=Paramecium tetraurelia GN=bP... [more]
TBB1_CYAPA1.946e-11581.51Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10B07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10B07-C14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069391 ID=CX069391; Name=CX069391; organism=Citrus sinensis; type=EST; length=770bp
CTCACTCTCATTTTTTCTCTCTCTAGCGAAAATCTTCAGTAAGTCTCAGG
AAAAATGAGGGAGATCCTTCATGTTCAGGGTGGACAATGTGGTAACCAGA
TTGGTTCCAAGTTCTGGGAGGTTGTCTGTGATGAACATGGCATCGACCCA
ACCGGAAGATACATTGGCACCTCAGATCTGCAGTTGGAGCGTGTCAATGT
CTACTACAATGAGGCCTCCTGTGGGCGGTTTGTTCCTCGTGCAGTTCTCA
TGGATTTGGAGCCTGGCACCATGGACAGTGTTAGAACTGGTCCATACGGC
CAGATTTTCAGGCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAA
CAATTGGGCCAAGGGTCACTACACTGAGGGTGCTGAGCTTATTGATGCTG
TTCTTGATGTTGTGAGAAAAGAGGCTGAGAACTGTGACTGTCTTCAAGGT
TTCCAAGTCTGCCACTCTTTGGGTGGAGGAACTGGTTCTGGAATGGGTAC
CTTGTTGATCTCAAAAATTAGGGAGGAGTATCCTGACAGGATGATGCTCA
CATTCTCAGTGTTCCCTTCTCCAAAGGTCTCCGATACAGTTGTTGAGCCC
TACAATGCAACCCTCTCTGTTCACCAGCTTGTTGAGAATGCAGATGAGTG
CATGGTCCTTGATAATGAGGCTTTGTATGACATCTGCTTCAGAACTCTTA
AATTGACCACACCAAGCTTTGGTGACTTGAACCACTTGATTTCTGCAACC
ATGAGTGGCGTCACTTGCTG
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