CX069373

Overview
NameCX069373
Unique NameCX069373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4B_HUMAN (Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: SNF7_ASHGO (Vacuolar-sorting protein SNF7 OS=Ashbya gossypii GN=SNF7 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  564 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 842
            NK  A   LKRK+++E Q+ ++      +  Q+  +E A    ET+ A++ GAS MK + +  +++ VD+TMDEI EQ E  ++I EA+S P+
Sbjct:   58 NKNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPL 150          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHMP5_XENTR (Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = -3
Query:  561 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 854
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS   G
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: SNF7_DEBHA (Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii GN=SNF7 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = -3
Query:  561 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 842
            NK  A   LKRK+ YE  + ++ N    +  Q+  +EGA    ET+ A++ GA  MK +    ++D V+ TMD+I EQ E   +I EA+S P+G
Sbjct:   56 NKALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPVG 149          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHMP5_XENLA (Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = -3
Query:  561 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 854
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS   G
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154          
BLAST of CX069373 vs. ExPASy Swiss-Prot
Match: CHM4A_HUMAN (Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  561 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 845
            KNKRAA+Q L+RK+ +EQQ+ Q       +  Q   +E A    E +  +   A +MK   +  +ID VD+ M +I EQ E  +QI +A+S P+G
Sbjct:   57 KNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 151          
The following BLAST results are available for this feature:
BLAST of CX069373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CHM4B_HUMAN8.134e-1241.05Charged multivesicular body protein 4b OS=Homo sap... [more]
CHM4B_XENTR1.062e-1140.00Charged multivesicular body protein 4b OS=Xenopus ... [more]
CHM4B_XENLA1.062e-1140.00Charged multivesicular body protein 4b OS=Xenopus ... [more]
SNF7_ASHGO1.388e-1137.63Vacuolar-sorting protein SNF7 OS=Ashbya gossypii G... [more]
CHMP5_XENTR1.388e-1136.73Charged multivesicular body protein 5 OS=Xenopus t... [more]
SNF7_DEBHA1.812e-1138.30Vacuolar-sorting protein SNF7 OS=Debaryomyces hans... [more]
CHMP5_XENLA2.367e-1136.73Charged multivesicular body protein 5 OS=Xenopus l... [more]
CHM4A_HUMAN5.273e-1137.89Charged multivesicular body protein 4a OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10A10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10A10-A20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069373 ID=CX069373; Name=CX069373; organism=Citrus sinensis; type=EST; length=859bp
TTTTTTTTCACAATTTGTTCATTTATTAGTATGCCTAAAGAGTTTCACAC
CATAACCTGGCAGTACTTCTTCATGAGATGTGAAGTTGCTACCAAGAGCT
CAACGAACATAAAATTTTCACAGGAGAAGGAAAAAACACATCAAAGATGA
TGAACTCAATTAAAAGGTCTATAAGACAGAATACAGGATACATATTTCAA
ACAGGACTAGTTTACGCAAACTTTATATACAGTCTGTTCATTGAATGCAC
ACAGAAATCTTGAAGGTAATCCAAGTAGGCATAAATCTCCACATTATACG
GCCAGCTATTTAAATAATATCTTCATTATGGCGGTAAAACCTGCTTAAAG
AGCCATCTCAGCTTGTAAAGCAGCAAGCTCATCTTCCTCAGCTGTTCGCT
GCTTTTGGGGAACAGGACGGGCTTGTTGCCTGCCAGCAGGGACCTGAACC
GGAGCAGCAGGAGCTGTTGTAGCTGGCTGTAGAAGCTGCTCTTCCAACTC
AGCACCTTCCAGTTCTTCAAGTTCTGCTTCCAATTCATCCTCATCGAAAT
CAGCAGCAGCACCAATAGGAGTTGATAATGCTTCTTGAATCTGCTTCATG
TTCTCGGTCTGCTCATTGATCTCATCCATGGTCTTATCCACATCATCTAT
GTTCGTTGCTTTCTGCATAGCCTTCATTGTCGATGCTCCCGTCCTCAATG
CATCTACAGTCTCAGTTGTGGCTTTAGCACCTTCTAGCATTATCATCTGA
TCATGAATGCGCAATTGGAAATTCCCAAGCTGCTCTATTTGCTGTTCGTA
TAGCCTCTTCCTCTTCAAACATTGTATGGCCGCTCTTTTGTTCTTTGCTT
TGGAGTAGT
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