CX054048

Overview
NameCX054048
Unique NameCX054048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.998e-13
Identity = 57/188 (30.32%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  193 IPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSL--WPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGI-EPGKLASLFED--GIQGIRMNYYPPCAQA----NRVIGLTPHSD 729
            IPV+D++    D  + +     AC+D GF +L+NHGVP +++  ++ +   FFK    EK      P    GYG    +  +  + W + L L T P  I   SL  +   P   RA +E Y   ++ +   +L+LMA+ LGI +   L+ L +D       R+N+YPPC +       ++G   H+D
Sbjct:   27 IPVVDLT--HPDAKNLIVN---ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDRAG--PPDPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTD 206          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.998e-13
Identity = 53/191 (27.75%), Postives = 99/191 (51.83%), Query Frame = 1
Query:  187 LHIPVIDMSKLQDDDDDELAE----FHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFL-LTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQG----IRMNYYPPCAQANRVIGLTPHSDS 732
            + +PVID+S+L D  ++E  +       A ++ GF Q+INHG+   V+EKM+ +    F+ P ++K    +       +G     S  Q L W +   + +T  ++ +         T+L +T+E+++ E + +   L +++A+    + G+ +S F++        +RMN YPPC + + V GL PH+DS
Sbjct:   40 VELPVIDVSRLIDGAEEEREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSEKFSAGSYRWGTPSATSIRQ-LSWSEAFHVPMTDISDNKDF-------TTLSSTMEKFASESEALAYMLAEVLAE----KSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDS 218          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 54/222 (24.32%), Postives = 94/222 (42.34%), Query Frame = 1
Query:  103 ALASNSKEIPSRYIRPELDDEQVLADGSLHIPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPA----------NIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGK---LASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 729
            A+ S   EIPS++I P  +    +A   L + +ID+     +    + +   AC+  GF  ++NHG+   ++E+    ++ FF LPL EK    +      GY  +F      KL W + L      A                L       L      Y  E+ ++++ L++++ ++LGI   +       F+     +R+NYYP C +    +G  PH D
Sbjct:   16 AVLSGQTEIPSQFIWPAEESPGSVAVEELEVALIDVGA-GAERSSVVRQVGEACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCD 236          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 55/214 (25.70%), Postives = 100/214 (46.73%), Query Frame = 1
Query:  193 IPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQP--ANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPC---AQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            IPV++++     D +       AC++ GF +++NHGV  +++ +++ +   FF LP   K      P    GYG   +   +  + W + L L   P  ++ +T++++   P   R ++EEY  E+++V+  +L+++A+ LGIEP    S     E     +R+N+YP     A+    +G   H+D                   K G WV V
Sbjct:   31 IPVVNLA-----DPEAKTRIVKACEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLPQSLKNRAG--PPEPYGYGNKRI-GPNGDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAV 236          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 57/216 (26.39%), Postives = 94/216 (43.52%), Query Frame = 1
Query:  184 SLHIPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQG---IRMNYYPPCAQ----ANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            S  IP++D+SK      D       AC+D GF ++INHG+P   I +++++  +FF LP  EK      P +  GYG    +  +  + W + L L T   +    SL+       R  +++Y   ++ +   +L LMA+ L I+P  + S      Q     R+N+YP C +       +IG   H+D                   + G W+ V
Sbjct:   24 SSSIPLVDLSK-----PDAKTLIVKACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEKAG--PANPFGYGNK-RIGLNGDIGWIEYLLLTTNQDH--NFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISV 229          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 60/219 (27.40%), Postives = 98/219 (44.75%), Query Frame = 1
Query:  112 SNSKEIPSRYIRP--ELDDEQVLADGSLH---IPVIDMSKLQDDD----DDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEG-YGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRM--NYYPPCAQANRVIGLTPHSDS 732
            S   ++P  +  P  +L   + L    LH   IP ID+      D    ++ + E   A    GF Q+INHGV  +++EKMK  + +F +   E +        S    Y   F +      +W D       P   +   L    P   R  + EYS ++  +  FL +L+++ LG+EP  L  +  D  +G+ M  +YYPPC + +  +G + HSD+
Sbjct:   32 SGVSQVPRIFHHPTVKLSTPKPLPSDLLHLKTIPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDL----PEICRDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDM--DCSKGLLMLSHYYPPCPEPDLTLGTSQHSDN 244          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.680e-11
Identity = 51/177 (28.81%), Postives = 86/177 (48.59%), Query Frame = 1
Query:  235 DELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEE------KMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQ--GIRMNYYPPCAQANRVIGLTPHSDS 732
            D +A    AC++ GF +L+NHG+  +  E+ +T  +E ++           K   A+  +S E             LDW    FL   P +    S  P +     +T++E++L L+K+   LL L+ +NLG+E G L  +F    DG+   G +++ YPPC +   + GL  H+D+
Sbjct:   11 DAMAVLRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENV-------DGDNLDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDA 178          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 50/215 (23.26%), Postives = 95/215 (44.19%), Query Frame = 1
Query:  187 LHIPVIDMSKLQDDDDDE----LAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMA--CAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 813
            + +PVID+S L   ++ +    + +   A K+ GF Q++NHG+P+ V E M  + ++ F  P   K+    + L  +   +G     S  Q         +L++ + I           +LR  +E Y  E+ +V   + +++ K + +      ++FE     +R+N Y P    + V GL PH+D+ +               +  G+W+ VK
Sbjct:   38 IKLPVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPSATSPAQYSVSEAFHIILSEVSRISDDR------NNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDT-SFLTILSQDQIGGLELENNGQWISVK 245          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 56/208 (26.92%), Postives = 94/208 (45.19%), Query Frame = 1
Query:  151 ELDDEQVLADGSLH---IPVIDMSKLQDDD----DDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKL------DWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRM--NYYPPCAQANRVIGLTPHSD 729
            EL + + L    LH   IP ID+      D     + +     A    GF Q+INHGV  +++EKMK  + +F + P E +            +G+ F+   +  L      +W D  +    P       L    P   R  + EYS ++  +  FL +L+++ LG+ P  L  +  + ++G+RM  +Y+PPC + +   G + HSD
Sbjct:   47 ELANPKPLPSDLLHLKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYS-----RDFGRKFIYLSNFDLYTAAAANWRDTFYCYMAPDPPEPQDL----PEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDM--ECLKGLRMLCHYFPPCPEPDLTFGTSKHSD 243          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 64/236 (27.12%), Postives = 107/236 (45.34%), Query Frame = 1
Query:  139 YIRPELDDEQVLADGSLHIPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKL--PLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANI-----RTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEP-GKLASL--FEDGIQGIRMNYYPPCAQ--ANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            Y+ P+     VL      IPVID++     D D   +   AC++ GF ++INHGV   ++ +++ +   FF L   L++K      P    GYG    +  +  L W + + L    AN+     +TT+++   P   R  +EEY  E+++++   L+++ + L IEP  KL+ L   ++    +RMN+YP   +      IG   H+D                   K G WV V
Sbjct:   15 YVNPKCKPRPVL------IPVIDLT-----DSDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAINFFALHHSLKDKAG----PPDPFGYGTK-RIGPNGDLGWLEYILL---NANLCLESHKTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDV 231          
The following BLAST results are available for this feature:
BLAST of CX054048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
G2OX_PHACN3.998e-1330.32Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX8_ARATH3.998e-1327.75Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
GAOX1_ORYSJ1.163e-1224.32Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G2OX2_ARATH2.592e-1225.70Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX1_PEA3.385e-1226.39Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
ACCH3_ARATH7.540e-1227.401-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_DENCR1.680e-1128.811-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
G2OX7_ARATH2.194e-1123.26Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
ACCH2_ARATH2.865e-1126.921-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G2OX3_ARATH4.888e-1127.12Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H08-O16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054048 ID=CX054048; Name=CX054048; organism=Citrus sinensis; type=EST; length=815bp
AAAAGCTAGGAGAATAATACCCCAAAAGAGAGTTGCGAAATGGAAACTGC
AGTTGACAAGAAAAATGTCTACGGCGGTTCTTTACCTGTAGAAAATGTTC
AAGCTCTTGCATCTAATTCCAAGGAAATCCCATCCCGGTACATCCGACCA
GAACTTGATGATGAGCAAGTTCTCGCTGATGGATCACTTCATATTCCAGT
GATTGATATGAGCAAGCTTCAGGACGATGATGATGATGAATTGGCAGAGT
TCCATTTGGCTTGCAAAGACTCGGGCTTCCTCCAGTTGATCAATCACGGG
GTACCAGAAAAAGTAATTGAGAAGATGAAAACTGACATTGAGGAATTCTT
TAAGCTGCCATTAGAGGAGAAGATGGCTTGCGCACAGCTGCCAAATAGCA
TTGAAGGTTATGGGCAAGCTTTCGTTGTCTCCAAGGATCAAAAGCTTGAT
TGGGGAGACATGCTTTTTCTTCTTACTCAACCTGCCAATATTAGAACCAC
GAGTCTCTGGCCTACCATCCCTACTTCTTTAAGAGCAACCATAGAGGAAT
ACTCTTTGGAACTGCAAAAGGTTACAATCTTTCTGTTGAAGTTGATGGCT
AAGAATTTGGGGATTGAACCTGGGAAACTTGCAAGCTTGTTTGAAGATGG
TATACAAGGAATAAGAATGAATTATTATCCACCATGTGCCCAGGCCAACA
GGGTTATTGGTCTCACTCCACACTCTGACTCTGTTGCATTAACATTGTTG
GTTCAAGTGAACCAAGTACAAGGTTTACAGGTAAAGAAATATGGCAAGTG
GGTACCAGTCAAACC
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