DR403733

Overview
NameDR403733
Unique NameDR403733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.065e-46
Identity = 84/137 (61.31%), Postives = 112/137 (81.75%), Query Frame = 3
Query:  219 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVVSYETAQ 629
            M   YDYLFKLLLIGDSGVGK+C L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF N++ W+  I+ +AS +V K+++GNKCD    + VS E  +
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGE 137          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 83/137 (60.58%), Postives = 114/137 (83.21%), Query Frame = 3
Query:  219 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVVSYETAQ 629
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNK D+   + VS E  +
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGE 137          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.538e-45
Identity = 82/127 (64.57%), Postives = 108/127 (85.04%), Query Frame = 3
Query:  231 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVV 611
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVV 132          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.538e-45
Identity = 82/127 (64.57%), Postives = 108/127 (85.04%), Query Frame = 3
Query:  231 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVV 611
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVV 132          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.538e-45
Identity = 82/127 (64.57%), Postives = 108/127 (85.04%), Query Frame = 3
Query:  231 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVV 611
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVV 132          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.538e-45
Identity = 82/127 (64.57%), Postives = 108/127 (85.04%), Query Frame = 3
Query:  231 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVV 611
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVV 132          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.538e-45
Identity = 82/127 (64.57%), Postives = 108/127 (85.04%), Query Frame = 3
Query:  231 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVV 611
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVV 132          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.426e-45
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 3
Query:  216 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVVSYETAQ 629
            T +  YD + KLLL+GDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+++    LVGNKCD   N+ VS E  Q
Sbjct:    6 TSSRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQ 143          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.843e-45
Identity = 81/127 (63.78%), Postives = 107/127 (84.25%), Query Frame = 3
Query:  231 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVV 611
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+D KI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+++V ++L+GNKCD+   +VV
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVV 132          
BLAST of DR403733 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.302e-44
Identity = 83/138 (60.14%), Postives = 110/138 (79.71%), Query Frame = 3
Query:  231 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLPANKVVSYETAQAFXDE 644
            YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGNK D+   +VV+YE  +A   E
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD-TRVVTYEQGEALAKE 153          
The following BLAST results are available for this feature:
BLAST of DR403733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CHICK1.065e-4661.31Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB8A_PONAB5.285e-4660.58Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB10_PONAB1.538e-4564.57Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.538e-4564.57Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.538e-4564.57Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_DISOM1.538e-4564.57Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB10_CANFA1.538e-4564.57Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
SEC4_CANAL3.426e-4560.14Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB10_CHICK5.843e-4563.78Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
SEC4_CANGA1.302e-4460.14Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246B18 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246B18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403733 ID=DR403733; Name=DR403733; organism=Citrus sinensis; type=EST; length=646bp
GGGGAAGGGGGTGGTGCGGCACTGTGGGGGGGGGATCATTTAAGCCTTTG
CTTGTCGTTTCAGTATTTTCTTTCTTTTTTTTCTTTTTTGTCTTGTCTTC
TGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACGAGATCTC
GCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTTTTTTCTT
TTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGTTTAAGCT
TCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTCTTGAGAT
TTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGGAGTTGAT
TTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAACTTCAAAT
TTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGCAGCTACT
ACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGACCAAGAG
AGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTTATGCTAG
TGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTCCCTGCAA
ATAAGGTTGTCTCGTACGAAACAGCCCAGGCATTTNNAGATGAAAT
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