DR403720

Overview
NameDR403720
Unique NameDR403720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 2.061e-17
Identity = 47/124 (37.90%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:  274 TAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            +A  + ++Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++ FL+++
Sbjct:    7 SAVAQSTVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTTRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNA 130

HSP 2 Score: 22.7126 bits (47), Expect = 2.061e-17
Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERY 712
            +   FEKFLV  +G  + RY
Sbjct:  158 ISWNFEKFLVGPDGVPVRRY 177
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.472e-17
Identity = 52/118 (44.07%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:  292 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            ++Y++    +DG + V   ++ GK +L VNVAS CGLT + Y EL+ L E+ +     +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG N   V+ FLKSS
Sbjct:   39 TVYEYGANTLDGGEYVQFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSS 155

HSP 2 Score: 21.1718 bits (43), Expect = 3.472e-17
Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERY 712
            ++  FEKFLV  +G  + R+
Sbjct:  179 IRWNFEKFLVGPDGAPVMRW 198
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX3_BOVIN (Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.866e-17
Identity = 52/120 (43.33%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:  292 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+ +  G  IL FPCNQFG QEPG N EI   A  +       F   F +F+K DVNG      Y FLK+S
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-GQYVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEI--LATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNS 155

HSP 2 Score: 20.7866 bits (42), Expect = 5.866e-17
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERY 712
            ++  FEKFLV  +G  I R+
Sbjct:  179 IRWNFEKFLVGPDGIPIMRW 198
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.626e-17
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  292 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155

HSP 2 Score: 21.9422 bits (45), Expect = 7.626e-17
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERYPPTTS 727
            ++  FEKFLV  +G  I R+   T+
Sbjct:  179 IRWNFEKFLVGPDGTPIMRWHHRTT 203
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.629e-17
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:  283 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK 621
            T +++YDF V  +DG +  L++++GKVLL+VNVA+ C  T   Y++ + + E       +ILAFPCNQF  QEP  N E       ++            IF KV+VNG +  P+Y+FLK
Sbjct:   36 TSQTIYDFHVPTLDGSEKSLAEYRGKVLLLVNVATYCAYT-FQYNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLK 154

HSP 2 Score: 24.6386 bits (52), Expect = 7.629e-17
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2 
Query:  665 FEKFLVDKNGKVIERYPPT 721
            FEKFL+DK G    R+ P+
Sbjct:  184 FEKFLIDKKGHPRYRFHPS 202
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.289e-16
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  292 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-DQYLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155

HSP 2 Score: 20.7866 bits (42), Expect = 1.289e-16
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERY 712
            ++  FEKFLV  +G  I R+
Sbjct:  179 IRWNFEKFLVGPDGIPIMRW 198
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.289e-16
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  292 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155

HSP 2 Score: 21.1718 bits (43), Expect = 1.289e-16
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERYPPTTS 727
            ++  FEKFLV  +G  I R+   T+
Sbjct:  179 IRWNFEKFLVGPDGIPIMRWHHRTT 203
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.289e-16
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  292 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155

HSP 2 Score: 21.1718 bits (43), Expect = 1.289e-16
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERYPPTTS 727
            ++  FEKFLV  +G  I R+   T+
Sbjct:  179 IRWNFEKFLVGPDGIPIMRWHHRTT 203
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX5_RAT (Epididymal secretory glutathione peroxidase OS=Rattus norvegicus GN=Gpx5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.289e-16
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  292 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            ++Y++    ++GK+ +P  ++ GK +L VNVA+ CGLT   Y EL+ L +  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG     ++ FLK S
Sbjct:   39 TIYNYEALSLNGKERIPFKQYAGKHVLFVNVATYCGLT-IQYPELNALQDDLKQFGLVILGFPCNQFGKQEPGDNTEILPGLKYVRPGKGFLPNFQLFAKGDVNGEKEQEIFTFLKRS 155

HSP 2 Score: 22.7126 bits (47), Expect = 1.289e-16
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 2 
Query:  653 VKXXFEKFLVDKNGKVIERY 712
            ++  FEKFLV  NG  + R+
Sbjct:  179 IRWNFEKFLVGPNGVPVMRW 198
[Close]
BLAST of DR403720 vs. ExPASy Swiss-Prot
Match: GPX1_PIG (Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.293e-16
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 1 
Query:  277 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSS 627
            A   +S+Y F+ + +  G+ + L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG N  P++ FL+ +
Sbjct:   13 AVAPRSVYAFSARPLAGGEPISLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNGEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGANAHPLFAFLREA 135

HSP 2 Score: 21.9422 bits (45), Expect = 1.293e-16
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 2 
Query:  665 FEKFLVDKNGKVIERY 712
            FEKFLV  +G  + RY
Sbjct:  167 FEKFLVGPDGVPLRRY 182
The following BLAST results are available for this feature:
BLAST of DR403720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX1_RAT2.061e-1737.90Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX6_RAT3.472e-1744.07Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]
GPX3_BOVIN5.866e-1743.33Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=... [more]
GPX3_HYLLA7.626e-1744.07Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPXC_DIRIM7.629e-1739.17Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX3_RAT1.289e-1644.07Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX3_PONPY1.289e-1644.07Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HUMAN1.289e-1644.07Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]
GPX5_RAT1.289e-1642.37Epididymal secretory glutathione peroxidase OS=Rat... [more]
GPX1_PIG1.293e-1636.80Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246B03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403720 ID=DR403720; Name=DR403720; organism=Citrus sinensis; type=EST; length=731bp
GGGGAACGNNNGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGAT
GCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAATCA
AAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCCT
ACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTCA
ACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAAC
GTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATAT
GACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTT
TAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGA
CACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACT
CAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGA
GCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGG
CAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCT
CCAGTTTACCAGTTTTTGAAGTCAAGTGNCTGGGGGATTTTTAGGCGACC
TTGTCAAGTGNNNCTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTC
ATCGAGAGATATCCACCAACTACCTCGCCTT
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