CX053777

Overview
NameCX053777
Unique NameCX053777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_STRPD (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_STRPC (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_STRPB (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_STRP8 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M18 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_STRP6 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M6 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_STRP3 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M3 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_STRP1 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M1 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_RICPU (30S ribosomal protein S13 OS=Rickettsia peacockii (strain Rustic) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 551
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_RICAE (30S ribosomal protein S13 OS=Rickettsia africae (strain ESF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 551
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123
[Close]
BLAST of CX053777 vs. ExPASy Swiss-Prot
Match: RS13_MACCJ (30S ribosomal protein S13 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 3 
Query:  192 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 548
            AR+ GV++P  KR+  +L YI+G+GRT A++IL +  + E+   +D++E+EL  IR+ V  Y +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG    +A KKK
Sbjct:    2 ARIAGVDVPREKRVVIALTYIYGIGRTSAQKILAEANVSEDTRVRDLTEDELGRIREIVDGYKVEGDLRREVNLNIKRLMEIASYRGIRHRRGLPTRGQNTKNNARTRKGPVKTVANKKK 121
The following BLAST results are available for this feature:
BLAST of CX053777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRPD8.127e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPC8.127e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPB8.127e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP88.127e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP68.127e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP38.127e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP18.127e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_RICPU8.127e-2750.8230S ribosomal protein S13 OS=Rickettsia peacockii ... [more]
RS13_RICAE8.127e-2750.8230S ribosomal protein S13 OS=Rickettsia africae (s... [more]
RS13_MACCJ8.127e-2751.6730S ribosomal protein S13 OS=Macrococcus caseolyti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_8B06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8B06-C11-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053777 ID=CX053777; Name=CX053777; organism=Citrus sinensis; type=EST; length=689bp
GTCACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAA
ATGGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTG
CAACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTG
TTTCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTT
GGAGGTGTCGAGATTCCAAACAACAAGCGGATTGAGTACTCGCTTCAGTA
TATTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCA
AAATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACA
ATTCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTT
CAATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAA
TTCGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAAT
TGTCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGC
CCCTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTG
ATTTTCTAATGTATTGAATTTGAATGTGAATCATTTGGACTACAAGCTTG
GTTACTTTCAATTCTGCCGGAGCTTTTGATGTAAAAAAA
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