CX053709

Overview
NameCX053709
Unique NameCX053709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEPG (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida (strain GB-1) GN=pdxH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36
Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = -2
Query:  438 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGK 875
            ++LLKG+D  GF ++TNYES K  +L  NP A++ F+W  L RQVR+EG VEKVS +ES+ Y+  RP GS++GA  S QS VI GR  L    K  E +FSD +    PE WGGYRL PE  EFWQG+ SRLHDRL Y  + +NG+
Sbjct:   65 VLLLKGLDEQGFTFFTNYESAKGQQLQANPFAAMTFFWPALERQVRIEGRVEKVSAQESDAYYQVRPLGSRLGAWASPQSRVIAGREELEGLVKATEARFSD-TQPHCPEHWGGYRLLPERIEFWQGRASRLHDRLNY--RFVNGQ 207          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEA8 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas aeruginosa (strain LESB58) GN=pdxH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36
Identity = 77/149 (51.68%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  432 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPK-PEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRD 875
            ++LLKG+D  GF ++TNYES K  +L  NP A++ F+W  L RQVR+EGSVEKV+ EES+ Y+  RP GS++GA  S QS VI  R  L +   E E +F+D    P  PE WGGYRL P+  EFWQG+ SRLHDRL Y  Q+    R+
Sbjct:   65 ILLLKGLDERGFTFFTNYESAKGRQLAANPRAAMTFFWPALERQVRIEGSVEKVTPEESDAYYQVRPLGSRLGAWASPQSRVIADRAELERLLAETERRFADQP--PSCPEHWGGYRLLPQRIEFWQGRPSRLHDRLDYRRQDGGWSRE 211          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_NOSP7 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pdxH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36
Identity = 77/139 (55.40%), Postives = 97/139 (69.78%), Query Frame = -2
Query:  459 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 875
            MVLLK  D  GF ++TNY SRK  EL ENP A+L+F+W  L RQVR+ G VEKVS+ ES+QYF +RP  S++GA VS QS VI  R VL ++ +E   K+ +   IP+P  WGG R+ P   EFWQG++SRLHDRL YS
Sbjct:   63 MVLLKDFDERGFAFFTNYNSRKGQELAENPLAALVFWWAELERQVRICGYVEKVSETESDQYFDTRPPNSRLGAWVSNQSEVIESREVLERRMQEFYSKYENQE-IPRPPHWGGLRVIPTEIEFWQGRSSRLHDRLLYS 200          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_VEREI (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Verminephrobacter eiseniae (strain EF01-2) GN=pdxH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.365e-36
Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            +VL+KG D  G VW+TNY+SRK  ++  NP A+L F+W  L R VR+EG V+KVSD+ES+ YF SRP  S+IGA  S QS VI GR VL         +F      P+P+ WGGYRL+P+L+EFWQG+ SRLHDRL+Y
Sbjct:   63 IVLIKGYDERGIVWFTNYDSRKGRQIAGNPCAALQFHWVELERVVRIEGLVQKVSDQESDAYFDSRPLDSRIGAWASPQSQVIAGRGVLLANAARYGAQF--MLKPPRPQHWGGYRLEPDLWEFWQGRKSRLHDRLRY 198          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_METPP (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Methylibium petroleiphilum (strain PM1) GN=pdxH PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.365e-36
Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = -2
Query:  441 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLI--PKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 875
            +VL+KG D  G VWYTNYESRK  EL  +P A+L F+W  L R VR+EG VEKVSD ES+ Y+ SRP  S++GA  S QS VI  R VL     ++  +F    L+  P+P  WGG+RL+P+ +EFWQG+ SRLHDRL+Y+ Q   G
Sbjct:   63 VVLIKGCDARGIVWYTNYESRKGRELAAHPFAALQFHWVDLERVVRIEGRVEKVSDTESDAYYRSRPLDSRLGAWASPQSQVIASRAVLVANAAKVGAQF----LLNPPRPPHWGGFRLRPDRWEFWQGRKSRLHDRLRYTQQPTGG 205          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEAB (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pdxH PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.427e-35
Identity = 76/149 (51.01%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  432 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPK-PEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRD 875
            ++LLKG+D  GF ++TNYES K  +L  NP A++ F+W  L RQVR+EGSVEKV+ EES+ Y+  RP GS++GA  S QS VI  R  L +   + E +F+D    P  PE WGGYRL P+  EFWQG+ SRLHDRL Y  Q+    R+
Sbjct:   65 ILLLKGLDERGFTFFTNYESAKGRQLAANPRAAMTFFWPALERQVRIEGSVEKVTPEESDAYYQVRPLGSRLGAWASPQSRVIADRAELERLLADTERRFADQP--PSCPEHWGGYRLLPQRIEFWQGRPSRLHDRLDYRRQDGGWSRE 211          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEAE (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas aeruginosa GN=pdxH PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.863e-35
Identity = 75/143 (52.45%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  450 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPK-PEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQE 875
            ++LLKG+D  GF ++TNYES K  +L  NP A++ F+W  L RQVR+EGSVEKV+ EES+ Y+  RP GS++GA  S QS VI  R  L +   + E +F+D    P  PE WGGYRL P+  EFWQG+ SRLHDRL Y  Q+
Sbjct:   65 ILLLKGLDERGFTFFTNYESAKGRQLAANPRAAMTFFWPALERQVRIEGSVEKVTPEESDAYYQVRPLGSRLGAWASPQSRVIADRAELERLLADTERRFADQP--PSCPEHWGGYRLLPQRIEFWQGRPSRLHDRLDYRRQD 205          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_POLSJ (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=pdxH PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.863e-35
Identity = 77/141 (54.61%), Postives = 96/141 (68.09%), Query Frame = -2
Query:  453 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQ 875
            +VL+KG D  G VW+TNY SRK  EL  NP+A+L F+W  L R VR+EG VEKVS EES+ YF+SRP  S+IGA  S QS VI  R VL     +   KF      P+P  WGGYRL+P+ ++FWQG+ SRLHDRL+Y+ Q
Sbjct:   66 VVLVKGYDARGIVWFTNYNSRKGLELAGNPYAALQFHWVELERVVRIEGVVEKVSAEESDAYFNSRPLDSRIGAWASPQSEVIASRSVLVTNAAKYGAKF--LLQPPRPPHWGGYRLQPDNWQFWQGRKSRLHDRLRYTLQ 204          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_CYTH3 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=pdxH PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.434e-35
Identity = 69/138 (50.00%), Postives = 93/138 (67.39%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            +VLLKG++   FV+YTNY+S K  ++  N   +L F+W  L RQVR+EG + KVS E+S+ YF+SRP  S+IGA VS QS  +  R  L  +    E K+ + S++P+P  WGGY LKP  FEFWQG+ SRLHDR+ Y
Sbjct:   63 IVLLKGIEHGSFVFYTNYKSHKGSDITHNSFGALNFFWPELERQVRIEGKITKVSPEDSDTYFNSRPYQSKIGAWVSDQSKEVASREELESKITYYENKYPEGSVVPRPAHWGGYTLKPAYFEFWQGRPSRLHDRIVY 200          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_ARCB4 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Arcobacter butzleri (strain RM4018) GN=pdxH PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.434e-35
Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = -2
Query:  450 VLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQE 872
            VLLK  D  GFV++TNY+S KA ++ ENP A+ LF W  L RQV++EG ++K+S  ES +YF SRP+GSQIGA VS QS VI  R +L Q++ E++ KF +   +P P FWGGY +KP   EFWQG   RLHDR  Y  +E
Sbjct:   62 VLLKIFDEKGFVFFTNYKSTKANQIKENPKAAALFPWLDLERQVKIEGDIQKISTTESLKYFLSRPKGSQIGAWVSHQSQVISSRSLLEQKFDEIKNKFVNGE-VPFPSFWGGYIIKPTKIEFWQGGQDRLHDRFLYELKE 201          
The following BLAST results are available for this feature:
BLAST of CX053709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
PDXH_PSEPG6.405e-3653.42Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_PSEA86.405e-3651.68Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_NOSP76.405e-3655.40Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=No... [more]
PDXH_VEREI8.365e-3654.35Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ve... [more]
PDXH_METPP8.365e-3652.38Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Me... [more]
PDXH_PSEAB1.427e-3551.01Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_PSEAE1.863e-3552.45Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_POLSJ1.863e-3554.61Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Po... [more]
PDXH_CYTH32.434e-3550.00Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cy... [more]
PDXH_ARCB42.434e-3553.19Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_7G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7G02-N4-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053709 ID=CX053709; Name=CX053709; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTACACAAACTGATTTNTGGCGATGCCAAAAATCCTTAATAATGA
AAACGGCATTCATTTGTAGTTATCAAATGTAGACACTCACTTCAGTCTAA
ATCATGAAATTGGGATGTAACAAGGAAAGTTGAGATCCACTAATAAAGTG
ACTTGCCATCATACCATCAAGCCAAAGAACCCATTGTGGCAACTGCTCTA
AAGCCCACACAAAAAGGGTGCGTGGGTTGAATGGATAGGCAGCCAATACA
ATTTCTGGTCAAAACCTTTATCAGCAGCAATCTTGAAAGTCTGTAATCTT
GTATGTAGGGTCTTTACTGTCAAAACTCATATCATCATCAGAACTCTCTT
TATTGGTTGGGGGGTTTTATTGATTGAAGCTTCGCACTTCCAACACAGCA
AAACTTTCTTAAGCAAAACTAAAAAATTGCCATCCCGTTTTCCGTTGATT
TCCTGAGGAGAATATTGCAACCTATCATGCAAACGAGACGTCTGTCCTTG
CCAGAATTCGAAAAGCTCTGGTTTAAGCCTGTATCCTCCCCAGAATTCTG
GTTTTGGAATCAAACTCCAATCAGAGAATTTTTCCTCTAATTCTTTGTAT
TGCTGGTACAGAACATGCCTTCCAGGAATCACAGAACTCTGTTTGCTAAC
TATTGCTCCAATCTGACTTCCTCTGGGACGGCTATGGAAGTACTGCTCAG
ATTCCTCATCAGAAACTTTTTCAACAGAGCCTTCCACTCTTACCTGCCGA
TTTAGACCATCCCAGTAGAAAAGAAGAGATGCGTGAGGATTTTCACATAA
TTCACATGCCTTTCTACTTTCATAATTGGTGTACCAGACAAAACCATCCC
TATCAACTCCCTTGAGCAATACCATT
back to top