CX053709

Overview
NameCX053709
Unique NameCX053709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PROMM (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Prochlorococcus marinus (strain MIT 9313) GN=pdxH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-35
Identity = 70/141 (49.65%), Postives = 100/141 (70.92%), Query Frame = -2
Query:  450 VLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQE 872
            VLLK  D+ GFV++TNY SRKA ++  +P+ SLLF W  L RQV + G  E++S  ES+ YF SRP GS++G  VS+QS VI  R +L  +++E+  +F++   +P PEFWGG+R+ P  FEFWQG+ +RL+DR +Y PQ+
Sbjct:   68 VLLKAFDKRGFVFFTNYGSRKAEDISAHPNVSLLFPWYDLERQVAIMGPAERISRAESQAYFSSRPFGSRLGVWVSQQSQVISSRQILEMKWQEMNRRFANGE-VPLPEFWGGFRVAPTEFEFWQGRENRLNDRFRYRPQQ 207          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PROM3 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Prochlorococcus marinus (strain MIT 9303) GN=pdxH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-35
Identity = 70/141 (49.65%), Postives = 100/141 (70.92%), Query Frame = -2
Query:  450 VLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQE 872
            VLLK  D+ GFV++TNY SRKA ++  +P+ SLLF W  L RQV + G  E++S  ES+ YF SRP GS++G  VS+QS VI  R +L  +++E+  +F++   +P PEFWGG+R+ P  FEFWQG+ +RL+DR +Y PQ+
Sbjct:   68 VLLKAFDKRGFVFFTNYGSRKAQDISAHPNVSLLFPWYDLERQVAIMGPAERISRAESQAYFSSRPFGSRLGVWVSQQSQVISSRQILKMKWQEMNRRFANGE-VPLPEFWGGFRVVPTEFEFWQGRENRLNDRFRYRPQQ 207          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_ACIC1 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=pdxH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-35
Identity = 77/138 (55.80%), Postives = 99/138 (71.74%), Query Frame = -2
Query:  462 VLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSK-QSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 872
            VLLK VD DGFV++TNY SRK  +L ENP ASL F W  + RQV V G+V KV+ EE+E+YF SRPR SQ GA  S+ QSSV+P R  L ++Y E+ ++F+    IP P FWGG+R+ PE  EFWQ + +R+HDRL+Y
Sbjct:   71 VLLKSVD-DGFVFFTNYRSRKGRDLSENPSASLCFPWFAIGRQVVVLGTVTKVTREETEEYFASRPRDSQCGAWSSENQSSVVPSRAWLDERYAEVAQRFAGVEHIPPPPFWGGFRVIPETVEFWQARPARMHDRLRY 207          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEPF (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pdxH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.422e-35
Identity = 75/141 (53.19%), Postives = 94/141 (66.67%), Query Frame = -2
Query:  453 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQ 875
            ++LLKG+D  GF ++TNYES K   L  NP A++ F+W  L RQVR+EG V KV+ EES+ Y+  RP GS++GA  S QS VI GR  L    K  E++F+D +    PE WGGYRL PE  EFWQG+ SRLHDRL Y  Q
Sbjct:   65 ILLLKGLDEQGFTFFTNYESAKGQHLAANPFAAMTFFWPTLERQVRIEGRVVKVTPEESDAYYQVRPLGSRLGAWASPQSRVINGRGELEDLLKATEQRFTD-TQPHCPEHWGGYRLLPERVEFWQGRASRLHDRLNYRVQ 204          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEA7 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas aeruginosa (strain PA7) GN=pdxH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.422e-35
Identity = 73/143 (51.05%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  450 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPK-PEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQE 875
            ++LLKG+D  GF ++TNYES K  +L  NP A++ F+W  L RQVR+EG +EKV+ +ES+ Y+  RP GS++GA  S QS VI  R  L +   E E +F+D +  P  PE WGGYRL P+  EFWQG+ SRLHDRL Y  Q+
Sbjct:   65 ILLLKGLDERGFTFFTNYESAKGRQLAANPRAAMTFFWPALERQVRIEGEIEKVTAQESDAYYQVRPLGSRLGAWASPQSRVIADRAELERLLAETERRFADQA--PSCPEHWGGYRLLPQRIEFWQGRPSRLHDRLDYRHQD 205          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_DEIGD (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Deinococcus geothermalis (strain DSM 11300) GN=pdxH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.081e-35
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  459 VLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVS-KQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 872
            VLL+G D  G  +YTNYES K  +L +NP A LLF+W  L RQVR  G VE+VS+EES  YFH+RPR SQI A  S  QS+ I  R  L  +   L+ ++ + + +P+P+FWGGYR++   +EFWQG+ SRLHDR +Y+
Sbjct:   67 VLLRGADERGLTFYTNYESHKGHDLAQNPQAELLFFWADLERQVRAYGPVERVSEEESTAYFHARPRESQIAAHASDPQSAPIANRGALEAKLAALQAQYPEGTPVPRPDFWGGYRVRVREWEFWQGRPSRLHDRFRYT 205          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEPW (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida (strain W619) GN=pdxH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.248e-35
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            ++LLKG+D  GF ++TNY+S K  +L  NP+A++ F+W  L RQVR+EG VEKV+ +ES+ Y+  RP GS++GA  S QS VI  R  L    K  E +FSD +    PE WGGYRL PE  EFWQG+ SRLHDRL Y
Sbjct:   65 VLLLKGLDDRGFTFFTNYDSAKGQQLQANPYAAMTFFWPALERQVRIEGRVEKVTPQESDDYYQVRPLGSRLGAWASPQSRVIASREALEGLVKATEARFSD-TQPHCPEHWGGYRLLPERIEFWQGRASRLHDRLNY 201          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEPK (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida (strain KT2440) GN=pdxH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.248e-35
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            ++LLKG+D  GF ++TNY+S K  +L  NP A++ F+W  L RQVR+EG V+KV+ +ES+ Y+  RP GS++GA  S QS VI GR  L    K  E +FSD +    PE WGGYRL PE  EFWQG+ SRLHDRL Y
Sbjct:   65 VLLLKGLDEQGFTFFTNYDSAKGQQLQANPFAAMTFFWPALERQVRIEGRVQKVTAQESDAYYQVRPLGSRLGAWASPQSRVIAGREELEGLVKATEARFSD-TQPHCPEHWGGYRLLPERIEFWQGRASRLHDRLNY 201          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSEP1 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pdxH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.248e-35
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            ++LLKG+D  GF ++TNY+S K  +L  NP A++ F+W  L RQVR+EG V+KV+ +ES+ Y+  RP GS++GA  S QS VI GR  L    K  E +FSD +    PE WGGYRL PE  EFWQG+ SRLHDRL Y
Sbjct:   65 VLLLKGLDEQGFTFFTNYDSAKGQQLQANPFAAMTFFWPALERQVRIEGRVQKVTAQESDAYYQVRPLGSRLGAWASPQSRVIAGREELEGLVKATEARFSD-TQPHCPEHWGGYRLLPERIEFWQGRASRLHDRLNY 201          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_PSESM (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas syringae pv. tomato GN=pdxH PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.208e-34
Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            ++LLKG+D  GF ++TNYES K  +L  +P A++ F+W  L RQVR+EG VEKVS +ES+ Y+  RP GS++GA  S QS VI  R  L    ++ E++F+D +    PE WGGYRL PE  EFWQG++SRLHDRL Y
Sbjct:   65 VLLLKGLDAQGFTFFTNYESAKGRQLAAHPFAAMTFFWPALERQVRIEGRVEKVSAQESDAYYQVRPLGSRLGAWASPQSRVIADRDELEGLIRQTEQRFAD-TQPHCPEHWGGYRLLPERIEFWQGRSSRLHDRLNY 201          
The following BLAST results are available for this feature:
BLAST of CX053709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
PDXH_PROMM4.151e-3549.65Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pr... [more]
PDXH_PROM34.151e-3549.65Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pr... [more]
PDXH_ACIC14.151e-3555.80Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_PSEPF5.422e-3553.19Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_PSEA75.422e-3551.05Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_DEIGD7.081e-3551.08Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=De... [more]
PDXH_PSEPW9.248e-3552.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_PSEPK9.248e-3552.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_PSEP19.248e-3552.90Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]
PDXH_PSESM1.208e-3452.17Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7G02-N4-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053709 ID=CX053709; Name=CX053709; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTACACAAACTGATTTNTGGCGATGCCAAAAATCCTTAATAATGA
AAACGGCATTCATTTGTAGTTATCAAATGTAGACACTCACTTCAGTCTAA
ATCATGAAATTGGGATGTAACAAGGAAAGTTGAGATCCACTAATAAAGTG
ACTTGCCATCATACCATCAAGCCAAAGAACCCATTGTGGCAACTGCTCTA
AAGCCCACACAAAAAGGGTGCGTGGGTTGAATGGATAGGCAGCCAATACA
ATTTCTGGTCAAAACCTTTATCAGCAGCAATCTTGAAAGTCTGTAATCTT
GTATGTAGGGTCTTTACTGTCAAAACTCATATCATCATCAGAACTCTCTT
TATTGGTTGGGGGGTTTTATTGATTGAAGCTTCGCACTTCCAACACAGCA
AAACTTTCTTAAGCAAAACTAAAAAATTGCCATCCCGTTTTCCGTTGATT
TCCTGAGGAGAATATTGCAACCTATCATGCAAACGAGACGTCTGTCCTTG
CCAGAATTCGAAAAGCTCTGGTTTAAGCCTGTATCCTCCCCAGAATTCTG
GTTTTGGAATCAAACTCCAATCAGAGAATTTTTCCTCTAATTCTTTGTAT
TGCTGGTACAGAACATGCCTTCCAGGAATCACAGAACTCTGTTTGCTAAC
TATTGCTCCAATCTGACTTCCTCTGGGACGGCTATGGAAGTACTGCTCAG
ATTCCTCATCAGAAACTTTTTCAACAGAGCCTTCCACTCTTACCTGCCGA
TTTAGACCATCCCAGTAGAAAAGAAGAGATGCGTGAGGATTTTCACATAA
TTCACATGCCTTTCTACTTTCATAATTGGTGTACCAGACAAAACCATCCC
TATCAACTCCCTTGAGCAATACCATT
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