CX053630

Overview
NameCX053630
Unique NameCX053630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.889e-54
Identity = 104/149 (69.80%), Postives = 123/149 (82.55%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.889e-54
Identity = 104/149 (69.80%), Postives = 123/149 (82.55%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.889e-54
Identity = 104/149 (69.80%), Postives = 123/149 (82.55%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.467e-54
Identity = 110/169 (65.09%), Postives = 126/169 (74.56%), Query Frame = -3
Query:  256 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 762
            YS++P+NP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V   K+ IPF RF GGVGR AQAK +    QGRWP KSA+F L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:    4 YSRDPENPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALSEREDAVSRAAPTDDAPAKKK 171          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.467e-54
Identity = 105/149 (70.47%), Postives = 123/149 (82.55%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS EPDN TKSCKARGS+LRVHFKNTRETA AI+++ L +A+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct:    4 YSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKRMSLRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.222e-54
Identity = 106/149 (71.14%), Postives = 122/149 (81.88%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS EPDN TKSCKARGS+LRVHFKNTRETA AI+ + L +A+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:    4 YSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKHMALRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK-AFGCTQGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.177e-54
Identity = 101/149 (67.79%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:    4 YAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.177e-54
Identity = 101/149 (67.79%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:    4 YAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.224e-53
Identity = 102/149 (68.46%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            Y+KEPDN +KSCK+RGS+LRVHFKNTRETA AI+++PL +A+R+L++V+  K+ +PF RF GGVGR AQAK+      GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I+HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:    4 YAKEPDNASKSCKSRGSNLRVHFKNTRETALAIKRMPLRRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.562e-53
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS+ P+N TKSCKARGSDLRVHFKNT E A A+R +PL +A+ +L  V  HK+ +PF RF GG+GR AQ K  +   QGRWPVKSA F+LDLLKNAESNAE KGLDVD L I HI V +A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153          
The following BLAST results are available for this feature:
BLAST of CX053630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL17_RAT1.889e-5469.8060S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE1.889e-5469.8060S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_BOVIN1.889e-5469.8060S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]
RL17_LONON2.467e-5465.0960S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_ARGMO2.467e-5470.4760S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_IXOSC3.222e-5471.1460S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_AEDAL7.177e-5467.7960S ribosomal protein L17 OS=Aedes albopictus GN=R... [more]
RL17_AEDAE7.177e-5467.7960S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]
RL17_ANOGA1.224e-5368.4660S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_CAEEL3.562e-5368.4660S ribosomal protein L17 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7B12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7B12-D24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053630 ID=CX053630; Name=CX053630; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTCTAAGCTTCAAAATAAGCTTGAAAAGTCTTTAA
TTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAACAAAACAGTAAA
CTGGACTTAATATGAAATAAACAAAATATGATGTCTGATTTGACTAAATA
ACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTCATCAAGAACACA
AAATAAAAAATCAATGCACTCTCCAATTGCTATGCTAAACCTCAAACAAT
TACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTAC
TGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGCAGGGAGAGGACA
TGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTT
TGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGCATCAACATCTAA
ACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGA
ACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTC
TTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCGTGTGAAGGGAAT
GGCCTGTTTATGGGCCATAACATCCTCCAAATACCTCTTAGCCTTCGTCA
AAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGTGTTCTTAAAATGA
ACCCTGAGATCAGAGCCCCTGGCTTTGCAGGACTTGGTAGGATTGTCAGG
CTCTTTTGAGTACT
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