CX053630

Overview
NameCX053630
Unique NameCX053630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.076e-53
Identity = 103/149 (69.13%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            Y++EPDN  KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V A K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+  GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL L+
Sbjct:    4 YAREPDNAGKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVTAQKECVPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYSGLDVDRLVVQHIQVNRAACLRRRTYRAHGRINPYMSSPCHIELWLT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.768e-52
Identity = 100/149 (67.11%), Postives = 122/149 (81.88%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            Y++EPDN TKSCK+RGS LRVHFKNT E A+AI+ +PL +A+R+L++V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YAREPDNATKSCKSRGSHLRVHFKNTHEAANAIKHMPLRRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.309e-52
Identity = 102/149 (68.46%), Postives = 119/149 (79.87%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YSKEP NPTKSCKARGS+LRVHFKNTRETA  I K+PL +A ++L++V    + +PF R+ GGVGR AQAK +    QGRWP KSA F+L LLKNAESNA+ +GLD D L I HIQVN+A + RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:    4 YSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.015e-52
Identity = 101/149 (67.79%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS+EP+   KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V+ HK+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YSREPEIAAKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVIGHKECVPFRRFNGGVGRCAQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.146e-51
Identity = 98/149 (65.77%), Postives = 120/149 (80.54%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    4 YSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.146e-51
Identity = 98/149 (65.77%), Postives = 120/149 (80.54%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    4 YSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.496e-51
Identity = 97/149 (65.10%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS+E DN TKSCKARG +LRVHFKNT ETA AI+++PL +A+R+L+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D + + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    4 YSRESDNVTKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRFLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRMVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_MACHI (60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.687e-51
Identity = 97/149 (65.10%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            Y+K   NP KSC+ARGS+LRVHFKNTRETA  I+++PL +A ++L++V   ++ +PF RF GGVGR AQAK +    QGRWP+KSA+F+L+LL+NAESNAE KGLD D L+I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YAKNARNPAKSCRARGSNLRVHFKNTRETAKTIKRMPLRRAIQFLKNVQDKQECVPFRRFNGGVGRCAQAK-QWGTTQGRWPIKSAQFLLELLRNAESNAEFKGLDSDRLFIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.427e-51
Identity = 98/149 (65.77%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS+EPD  +K+CKARGS+LRVHFKNTRETA AI+K+ L +A+ +L++V  HK+ +PF RF GGVGR +QAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YSREPDVASKTCKARGSNLRVHFKNTRETAMAIKKMSLRRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.829e-49
Identity = 94/148 (63.51%), Postives = 115/148 (77.70%), Query Frame = -3
Query:  319 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 762
            Y   P+NP + CKA+G++ RVH+KNT ET  AI+ + L KA+ YL +V+ HKQ IPF R  GGVGR AQAKN +   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:    4 YKFNPENPNRVCKAKGTNFRVHYKNTSETGRAIKGMHLHKARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150          
The following BLAST results are available for this feature:
BLAST of CX053630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL17_BIPLU6.076e-5369.1360S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]
RL17_PHLPP1.768e-5267.1160S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_DIACI2.309e-5268.4660S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17_AGRLI3.015e-5267.7960S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_DROYA1.146e-5165.7760S ribosomal protein L17 OS=Drosophila yakuba GN=... [more]
RL17_DROME1.146e-5165.7760S ribosomal protein L17 OS=Drosophila melanogast... [more]
RL17_DROPS1.496e-5165.1060S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]
RL17_MACHI5.687e-5165.1060S ribosomal protein L17 OS=Maconellicoccus hirsu... [more]
RL17_CARGR7.427e-5165.7760S ribosomal protein L17 OS=Carabus granulatus GN... [more]
RL17_PECGU1.829e-4963.5160S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_7B12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7B12-D24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053630 ID=CX053630; Name=CX053630; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTCTAAGCTTCAAAATAAGCTTGAAAAGTCTTTAA
TTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAACAAAACAGTAAA
CTGGACTTAATATGAAATAAACAAAATATGATGTCTGATTTGACTAAATA
ACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTCATCAAGAACACA
AAATAAAAAATCAATGCACTCTCCAATTGCTATGCTAAACCTCAAACAAT
TACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTAC
TGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGCAGGGAGAGGACA
TGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTT
TGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGCATCAACATCTAA
ACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGA
ACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTC
TTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCGTGTGAAGGGAAT
GGCCTGTTTATGGGCCATAACATCCTCCAAATACCTCTTAGCCTTCGTCA
AAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGTGTTCTTAAAATGA
ACCCTGAGATCAGAGCCCCTGGCTTTGCAGGACTTGGTAGGATTGTCAGG
CTCTTTTGAGTACT
back to top