CX053630

Overview
NameCX053630
Unique NameCX053630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = -3
Query:  319 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 762
            Y K   +  K  KA   ++    ++      AIR + L  AK++L +V+  K+A+PF +   G    +    +     GR+P K+ K++L +L+NAE+NA  KGLD++ + I HI  ++    +R   RA GR         HIE+ L
Sbjct:    6 YPKLDIDENKLAKAVIKNVPASIRDLYNVCKAIRGMKLNDAKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGRYPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVIL 153          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_PYRCJ (50S ribosomal protein L22P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = -3
Query:  325 PTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 741
            P +  KA   + R+ +K + E A  I+ + L +AK +LEDV+  K+ IP   F       A      P    +WPVK AK  L LL+N E+NA+ KGLDV+ L I H   ++  K      RA GR  P+     ++E+
Sbjct:   27 PEQIAKAYAPEQRMSWKKSVEVARFIKGMTLKQAKAWLEDVVKLKRPIPIKTFKKKQAHHATPWEGWP--VAKWPVKVAKRYLQLLENLENNAKFKGLDVERLVIIHAAAHKGIKIPNIMPRAFGRATPFNEETVNVEI 163          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_METTP (50S ribosomal protein L22P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG-----QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS  P+   +  +A G +L +  K+ RE   AIR + +  A+R+L+DV+A K+A+PF R+   V         H +G      GR+P K+A+ +L +L+NA  NAE KGL+ + L I +    + +  R    RA GR  P       IE+ L+
Sbjct:    6 YSITPEG--RFARAMGVELPISPKHAREICRAIRGMKVEAAERFLQDVIALKRAVPFRRYNRNVP--------HRHGLVGWPAGRFPQKAARAVLRVLENAIGNAEYKGLEKERLVIGYANTKKGRTFRGWMPRAMGRATPKNQETVSIEMILT 149          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_PICTO (50S ribosomal protein L22P OS=Picrophilus torridus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 43/141 (30.50%), Postives = 78/141 (55.32%), Query Frame = -3
Query:  319 PTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 741
            P +S +AR  ++ +  K+    AH ++ + L  AK  L++V+  K  +P+ R+   V       +R   G GR+PVK+A+    LL++  +NAE KGL  D+L I HI V++ +  ++ T +A+GR   +     ++E+ +
Sbjct:   10 PERSARARIREIDISLKDAVNVAHFLKGMDLDSAKNVLDNVIEKKVPVPYFRYMDSV------SHRKGIGPGRYPVKAARAFKKLLEDVSANAEFKGLS-DSLEIVHIAVSKGRMIKKYTPKAYGRAGAFFKDLVNLEVVV 143          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = -3
Query:  319 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 735
            K  KA   D+    ++      AIR + L  AK +L  V+  K+A+PF R+  G    +    +     GR+P K+ + +L +L+NAE+NA  KGLDVD L I HI  ++    +R   RA GR         +IE+ L
Sbjct:   15 KIAKAVIRDVPESIRDLYNVCKAIRGMYLNDAKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVIL 153          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_NITMS (50S ribosomal protein L22P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  325 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 762
            Y+ +  + T+  ++   +  +  K+ RE A AI+ L + KA+ YL+ V+   +A+ F R+   VG  A          GR+P K+A+  + +L N ESNAE KG+D+D L I +  V++    +R   RA GR  P  +   H+EL
Sbjct:    6 YAFQNYDATRHVRSSVREKDMSHKHAREVAVAIKGLSIEKARDYLQAVVNKDRAVAFRRYKNQVGHKADPGMM----SGRYPQKTAREFIKVLDNLESNAEYKGMDLDRLKIVNATVHKGVIVKRFIPRAMGRATPKNNVLTHVEL 147          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_METVS (50S ribosomal protein L22P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = -3
Query:  319 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 762
            Y  E D P+K+ KA G  LR+  K+  E    I  + L  A  +L  V+A +  +PF      V      K +     GR+P K+ + IL +L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    6 YKVEAD-PSKTAKAMGRTLRISKKHALEICREINGMKLETAVSFLNRVLALETPVPFKVHNKDV---PHRKGKIGTHAGRFPQKATEEILKVLDNAKKNAEYKGLNTEKLRIKHISSNKGFIIKRFMPRAFGRASPKYQETIHIQVIL 149          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_METB6 (50S ribosomal protein L22P OS=Methanoregula boonei (strain 6A8) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = -3
Query:  319 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 726
            + + ++L +  K++ E A  IR   +  A  YL DV+A K+AIPF  F     R    K   P     GR+PVK++K  + +L++ + NAE  GLD + L I H   N+ + Q+    RA GR +P +    +IE+ +
Sbjct:   17 RGKANELSISPKHSIEIADFIRHQRVNDALAYLADVVALKKAIPFRHF----NRNVAHKRGLPGNWDAGRYPVKASKAYIRILESIKKNAEYTGLDTENLEIIHASANRGRAQKAYFPRAMGRASPKVRETVNIEIVV 150          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_METS5 (50S ribosomal protein L22P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.159e-11
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  325 VHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 702
            V  K+      AIR + + +A+ +L+ VM  K+A+P+ R+  G    +    +     GR+P K+ K++   L+NA +NA+ KGLD D L + HI  ++    +R   RA GR     +   HIE+
Sbjct:   26 VSIKDLYNVCKAIRGMNVKEAQAFLQRVMEEKEALPYWRYDHGASHKSNISRKWKVKSGRYPKKAIKYVNKALENALANAQGKGLDEDKLKVVHIAAHKGIIIKRFMPRAFGRATKKYNRTSHIEV 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL22_HALSA (50S ribosomal protein L22P OS=Halobacterium salinarium GN=rpl22p PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 42/149 (28.19%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS + D+   S KA   +  +  K+++  A  I    +  AK YL+ V+  ++++PF +   GVG             GR+P K++K  L LL N  +NA+ +G D D + I H+  ++  + + R  RA GR   + ++ C +E+ ++
Sbjct:    5 YSVDVDSEA-SAKAMLRERSISLKHSKAIAREISGETVADAKEYLQAVIDEERSVPFKQHNSGVGHRNDIDGWDA---GRYPEKASKDFLKLLSNVSNNADQQGFDADEMVIEHVAPHKVGESQGRKPRAMGRATTWNATLCDVEIVVT 149          
The following BLAST results are available for this feature:
BLAST of CX053630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL22_SULTO1.238e-1331.0850S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_PYRCJ1.238e-1335.2550S ribosomal protein L22P OS=Pyrobaculum calidifo... [more]
RL22_METTP1.617e-1333.7750S ribosomal protein L22P OS=Methanosaeta thermop... [more]
RL22_PICTO3.603e-1330.5050S ribosomal protein L22P OS=Picrophilus torridus... [more]
RL22_SULSO8.027e-1333.8150S ribosomal protein L22P OS=Sulfolobus solfatari... [more]
RL22_NITMS8.027e-1332.8850S ribosomal protein L22P OS=Nitrosopumilus marit... [more]
RL22_METVS1.048e-1234.4650S ribosomal protein L22P OS=Methanococcus vannie... [more]
RL22_METB62.336e-1233.3350S ribosomal protein L22P OS=Methanoregula boonei... [more]
RL22_METS51.159e-1131.7550S ribosomal protein L22P OS=Metallosphaera sedul... [more]
RL22_HALSA1.514e-1128.1950S ribosomal protein L22P OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7B12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7B12-D24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053630 ID=CX053630; Name=CX053630; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTCTAAGCTTCAAAATAAGCTTGAAAAGTCTTTAA
TTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAACAAAACAGTAAA
CTGGACTTAATATGAAATAAACAAAATATGATGTCTGATTTGACTAAATA
ACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTCATCAAGAACACA
AAATAAAAAATCAATGCACTCTCCAATTGCTATGCTAAACCTCAAACAAT
TACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTAC
TGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGCAGGGAGAGGACA
TGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTT
TGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGCATCAACATCTAA
ACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGA
ACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTC
TTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCGTGTGAAGGGAAT
GGCCTGTTTATGGGCCATAACATCCTCCAAATACCTCTTAGCCTTCGTCA
AAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGTGTTCTTAAAATGA
ACCCTGAGATCAGAGCCCCTGGCTTTGCAGGACTTGGTAGGATTGTCAGG
CTCTTTTGAGTACT
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