CX053627

Overview
NameCX053627
Unique NameCX053627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.800e-75
Identity = 139/225 (61.78%), Postives = 169/225 (75.11%), Query Frame = 1
Query:  184 LLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            L   D     T+YDEV  SFD +GL++ LLRGIY YGFE PS+IQQR I+P  KG DV+ QAQSGTGKTATF    LQ +D  + + QAL++APTRELA QI+KV+ A G+Y+ ++ HAC+GGTSV ED R++Q GVHV+VGTPGR+ DM+ R+ L+ D IKMF+LDEADEMLSR FKD IYDIF  LP   Q  + SATMP E L+IT KFM  PVRILVK+DE
Sbjct:    5 LTDIDSSQITTNYDEVVTSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRVIQEGVHVIVGTPGRIHDMIERRILKTDLIKMFILDEADEMLSREFKDPIYDIFTTLPETTQTVLLSATMPAEVLDITGKFMRDPVRILVKKDE 229          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.800e-75
Identity = 143/224 (63.84%), Postives = 173/224 (77.23%), Query Frame = 1
Query:  187 LSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            L  DG    ++++EV D+FD M L+  LLRGIYAYGFE+PSAIQQR I+P   G D I QAQSGTGKTATF   ILQ++D  + + QALVLAPTRELAQQI+KV+ ALGDYL V  HACVGGT+VRED   L  G H+VVGTPGRVFDM+ R +L+ + + MF LDEADEMLS GFK+ IY+IFQLLP + QV + SATM PE L++T+KFM  P+RILVK+DE
Sbjct:   12 LQIDGDLINSNWNEVVDNFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTKKFMRDPIRILVKKDE 235          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.160e-74
Identity = 144/219 (65.75%), Postives = 173/219 (79.00%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:   31 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE 249          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.160e-74
Identity = 144/219 (65.75%), Postives = 173/219 (79.00%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE 240          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.160e-74
Identity = 144/219 (65.75%), Postives = 173/219 (79.00%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:   31 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE 249          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.978e-74
Identity = 142/219 (64.84%), Postives = 174/219 (79.45%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQ+ I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPT+ELA+QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:   30 EFQTSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE 248          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.584e-74
Identity = 143/219 (65.30%), Postives = 173/219 (79.00%), Query Frame = 1
Query:  205 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            +F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + + QAL+LAPTRELA QI+KV+ ALGDY+ V+ H+C+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE 240          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.364e-73
Identity = 148/248 (59.68%), Postives = 181/248 (72.98%), Query Frame = 1
Query:  118 MAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            MA  A   +   AR+   K  ++   +   F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:    1 MAATATMATSGSARKRLLKEEDMTKVE---FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 245          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.364e-73
Identity = 148/248 (59.68%), Postives = 181/248 (72.98%), Query Frame = 1
Query:  118 MAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            MA  A   +   AR+   K  ++   +   F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:    1 MAATATMATSGSARKRLLKEEDMTKVE---FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 245          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 6.364e-73
Identity = 148/248 (59.68%), Postives = 181/248 (72.98%), Query Frame = 1
Query:  118 MAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            MA  A   +   AR+   K  ++   +   F TS + +V  +FD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATF   +LQ LD  + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   IKM VLDEADEML++GFK+QIYD+++ LP   QV + SAT+P E LE+T KFM  P+RILVKRDE
Sbjct:    1 MAATATMATSGSARKRLLKEEDMTKVE---FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 245          
The following BLAST results are available for this feature:
BLAST of CX053627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_YARLI6.800e-7561.78ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_CRYNE6.800e-7563.84ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A3_XENTR1.160e-7465.75Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE1.160e-7465.75Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA1.160e-7465.75Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
I4A3B_XENLA1.978e-7464.84Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
IF4A3_SALSA2.584e-7465.30Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A3_RAT6.364e-7359.68Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG6.364e-7359.68Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_BOVIN6.364e-7359.68Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7B10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7B10-D20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053627 ID=CX053627; Name=CX053627; organism=Citrus sinensis; type=EST; length=859bp
GTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATCTTCTCCTTCTC
TTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTTTAATCACCATC
ATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTT
GATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGG
GCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAA
TGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTTATGGGTTTGAG
AAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACT
TGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCT
GCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCC
CTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATTGAGAAAGTAAT
GAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTG
GGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTT
GTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTT
ACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGCTGATGAAATGC
TTTCCCGTGGTTTTAAGGATCAGATCTATGATATTTTCCAGCTGCTTCCA
GCTAAAGTTCAGGTGGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTT
GGAGATTACAAGGAAGTTTATGAACAAGCCTGTGAGAATCTTGGTTAAAC
GTGATGAAC
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