CX053627

Overview
NameCX053627
Unique NameCX053627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.269e-69
Identity = 134/222 (60.36%), Postives = 168/222 (75.68%), Query Frame = 1
Query:  196 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE+L+RGF++QIYD+++ LP   QV V SAT+P + L++T KFM  PVR+LVKRDE
Sbjct:   11 DRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDE 232          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 5.575e-69
Identity = 129/210 (61.43%), Postives = 164/210 (78.10%), Query Frame = 1
Query:  229 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            V+ +F++M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   +LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT+V ED R L  G H+V GTPGRV DM+RR+ LR  +IKM VLDEADE+L++GF++QIYD+++ LP   QV V SAT+P + L++T KFM  PVRILVKRDE
Sbjct:   24 VHPTFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDE 233          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.575e-69
Identity = 134/222 (60.36%), Postives = 168/222 (75.68%), Query Frame = 1
Query:  196 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE+L+RGF++QIYD+++ LP   QV V SAT+P + L++T KFM  PVR+LVKRDE
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDE 232          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.282e-69
Identity = 128/215 (59.53%), Postives = 164/215 (76.28%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            T+YD V  +FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D      QAL+LAPTRELA QI+ V+  +G YL V VHA +GGTS+++D    ++GV +VVGTPGRVFDM+ R+  + D +KMF+LDEADEMLS GFK+QIY+IF+LLP   QV + SATMP + LE+T KFMN PVRILVK+DE
Sbjct:   16 TNYDNVVYTFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDE 230          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 7.282e-69
Identity = 134/222 (60.36%), Postives = 168/222 (75.68%), Query Frame = 1
Query:  196 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE+L+RGF++QIYD+++ LP   QV V SAT+P + L++T KFM  PVR+LVKRDE
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDE 232          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.510e-69
Identity = 134/222 (60.36%), Postives = 168/222 (75.68%), Query Frame = 1
Query:  196 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE+L+RGF++QIYD+++ LP   QV V SAT+P + L++T KFM  PVR+LVKRDE
Sbjct:   11 DRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDE 232          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.622e-68
Identity = 129/207 (62.32%), Postives = 160/207 (77.29%), Query Frame = 1
Query:  238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            SF+ M L+E+LLRGIYAYG+E PSA+Q R I+  CKG DVI QAQSGTGKTATF  GILQ +D  +   QAL+L+PTRELA QI+ V+ ALGD++ V+ HAC+GGTSV  D + L  G HVV GTPGRV DM+RR++LR   +KM +LDEADE+L++GFK+QIYDI++ LP   QV V SAT+P + LE+T KF   PVRILVKRDE
Sbjct:   22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDE 228          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.119e-68
Identity = 128/215 (59.53%), Postives = 163/215 (75.81%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            ++YD V   FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D      QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+ +D    ++GV +VVGTPGRVFDM+ R+  R D +KMF+LDEADEMLS GFK+QIY+IF+LLP   QV + SATMP + LE+T KFMN PVRILVK+DE
Sbjct:   16 SNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMIERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDE 230          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.119e-68
Identity = 130/221 (58.82%), Postives = 164/221 (74.21%), Query Frame = 1
Query:  196 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            D     ++YD+V  SFD + L+E LLRGI+ YGF +PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ +D  +   Q L+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS++ED   L+ G  ++VGTPGRVFDM+ R+  + D IKMF+LDEADEMLS GFK+QIY+IF +LP   QV + SATMP + LE+T KFM  PVRILVK+DE
Sbjct:    9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDE 229          
BLAST of CX053627 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 2.119e-68
Identity = 125/211 (59.24%), Postives = 162/211 (76.78%), Query Frame = 1
Query:  226 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 858
            ++Y +F++M L+  LL+GIY YGFE PSAIQ R I+   +G D I QAQSGTGKTATF  GIL  +D     CQALVL+PTRELAQQIE V+  LGDY+ V+ HAC+GGT V ED + LQ G H++ GTPGRV DM++R+++ P ++KM VLDEADE+L++GFK+QIY+I++ LPA  QV V SAT+ PE LE+T KF + PV+ILVKRD+
Sbjct:   21 KIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVVVSATLTPEVLEMTNKFTSDPVKILVKRDD 231          
The following BLAST results are available for this feature:
BLAST of CX053627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASPCL4.269e-6960.36ATP-dependent RNA helicase fal1 OS=Aspergillus cla... [more]
FAL1_NEUCR5.575e-6961.43ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_ASPTN5.575e-6960.36ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
IF4A_DEBHA7.282e-6959.53ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
FAL1_ASPNC7.282e-6960.36ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
FAL1_NEOFI9.510e-6960.36ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_SCHPO1.622e-6862.32ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
IF4A_LODEL2.119e-6859.53ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_KLULA2.119e-6858.82ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
FAL1_PICGU2.119e-6859.24ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7B10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7B10-D20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053627 ID=CX053627; Name=CX053627; organism=Citrus sinensis; type=EST; length=859bp
GTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATCTTCTCCTTCTC
TTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTTTAATCACCATC
ATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTT
GATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGG
GCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAA
TGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTTATGGGTTTGAG
AAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACT
TGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCT
GCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCC
CTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATTGAGAAAGTAAT
GAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTG
GGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTT
GTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTT
ACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGCTGATGAAATGC
TTTCCCGTGGTTTTAAGGATCAGATCTATGATATTTTCCAGCTGCTTCCA
GCTAAAGTTCAGGTGGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTT
GGAGATTACAAGGAAGTTTATGAACAAGCCTGTGAGAATCTTGGTTAAAC
GTGATGAAC
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