DR403568

Overview
NameDR403568
Unique NameDR403568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_ENCCU (26S proteasome regulatory subunit RPN1 OS=Encephalitozoon cuniculi GN=RPN1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 73/218 (33.49%), Postives = 121/218 (55.50%), Query Frame = 1 
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKEN 657
            +R  +PL   +L  SNP+VNV+D L +  +  ++   ++ ++SLGLIG+GT N+RI  +L    SYYYKD+ +L  ++IAQGLV +GKGLL+++P + D+    P    G+ +T+F  LD     +   H  ++FL+     +  +T  E +                     PK ++  QTH++PV+L+   RAE  T++ +  S  +E  +ILK+N
Sbjct:  586 LRSVLPLCYSILYPSNPQVNVLDMLEKSLNIGETNCIISTIVSLGLIGAGTLNSRITKILDQQYSYYYKDSKVLPVLKIAQGLVSLGKGLLSISPLYFDKTTFMPKNTIGLFSTVFMLLDSSISPLVSSHAYMFFLLCQACTQKYVTCSEKIN-----IRVGHPINTVGMVGEPKKLSSVQTHTSPVVLSEKIRAE--TDENV-CSSYIEDVLILKKN 795
The following BLAST results are available for this feature:
BLAST of DR403568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RPN1_ENCCU5.522e-2733.4926S proteasome regulatory subunit RPN1 OS=Encephal... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241I08 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241I08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403568 ID=DR403568; Name=DR403568; organism=Citrus sinensis; type=EST; length=747bp
GGGATTCGTCGTGCAGTTCCGTTGGCTCTTGGTCTCCTATGTATATCAAA
CCCAAAGGTTAATGTTATGGACACATTAAGCCGGCTAAGCCATGATACTG
ATTCAGAAGTAGCTATGGCTGCCGTTATATCATTGGGTTTGATAGGGTCG
GGAACGAACAATGCTAGAATAGCTGGCATGCTTCGCAATCTCTCAAGCTA
CTACTACAAAGATGCCAATCTTCTGTTTTGTGTCCGAATTGCTCAAGGAT
TAGTGCACATGGGAAAGGGTCTCTTGACCCTTAACCCATACCATTCTGAT
CGCTTCTTGCTATCACCGACTGCTCTTGCTGGTATAGTTACCACTCTTTT
TGCATGTCTAGACATGAAGGCAGTCATCGTGGGGAAATATCATTATGTTC
TATACTTCCTTGTCTTGGCAATGCAGCCAAGAATGTTACTGACTGTAGAT
GAGAATCTCAAACCCCTGTCTGTTCCTGTTCGGGTGGGTCAGGCAGTTGA
TGTTGTTGGCCAGGCAGGTCGGCCCAAGACCATCACTGGTTTCCAGACAC
ACTCAACCCCAGTTCTTCTGGCTGCTGGTGATAGAGCAGAGTTGGCTACT
GAGAAATATATCCCTCTTTCGCCGATTCTTGAAGGCTTTGTCATCTTGAA
AGAGAACTCAGACTATGGAGAGGATCACTAGTTTTGTCACCCCAGGGCAA
AGGGAGTTCATTTATTGAAGTGTGTGTCATCATCATACCAGCTTTTA
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