DR403517

Overview
NameDR403517
Unique NameDR403517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.032e-24
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    7 RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 222
            +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:  109 KMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.032e-24
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    7 RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 222
            +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  109 KMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.032e-24
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    7 RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 222
            +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  109 KMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 3.321e-23
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 222
            H +L EDELRDA LLVFANKQDLP AM+  ++T++LGL  L++R WYIQ TCA SG+GLY+GLDWLS+ I +K
Sbjct:  110 HTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 210
            HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:  104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 210
            HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:  104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 210
            HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:  104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 210
            HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:  104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.822e-21
Identity = 42/69 (60.87%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 210
            HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CAT+G+GLYEGL WL++N
Sbjct:  104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSN 172          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 210
            HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CA SG+GLYEGL WL++N
Sbjct:  104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSN 172          
The following BLAST results are available for this feature:
BLAST of DR403517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
ARF5_HUMAN1.032e-2469.44ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF4_PONAB1.032e-2472.22ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN1.032e-2472.22ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF_GIALA3.321e-2365.75ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_RAT8.180e-2262.32ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG8.180e-2262.32ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE8.180e-2262.32ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN8.180e-2262.32ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK1.822e-2160.87ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF6_XENLA3.108e-2160.87ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241F10 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403517 ID=DR403517; Name=DR403517; organism=Citrus sinensis; type=EST; length=485bp
GGGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGT
ATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCTGAGATTA
CTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACATCCAG
AGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGGATTGGCT
CTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTTTTTGCGG
ACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTTTCTTTTT
TAACCCTTTTTGTTTGAGACGGTTGGGTTGTTGTGTTGTTTTGGCCCTAG
GATCTTTACAACTATATTGTACTAGAAGAATTGTTGGTTGGATACATGTA
CTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACTAATTTGG
TGCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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