DR403516

Overview
NameDR403516
Unique NameDR403516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH104_RHIME (10 kDa chaperonin 4 OS=Rhizobium meliloti GN=groS4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   80 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            P   RV+V ++    KT  G+++P+    K   G++VAVG GARD +GK +P+ VK GD +L  ++ G EVK+  +   + ++  I+G +
Sbjct:    8 PLHDRVVVRRVESEEKTKGGVIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGDRILFGKWSGTEVKINGEDLLIMKEADIMGVI 97          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH101_RHILO (10 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   80 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            P   RV++ +    +K+  GI++P+    K   G+V+AVGPGARD NG  +P+ VK GD +L  ++ G EVK+  +   + ++  I+G +
Sbjct:    5 PLHDRVVIRRAEGDTKSKGGIIIPDNAKEKPQEGEVIAVGPGARDENGALVPLDVKAGDLILFGKWSGTEVKIDGEDLLIMKEADIMGVI 94          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_DESAA (10 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 2
Query:   71 RLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 340
            +L P   R+LV+++   +KT  GI++P+    K   G++VAVGPG    +G  I + VK GD VL  +Y G EVK+  ++Y +  ++ +LG
Sbjct:    2 KLQPLADRILVKRLAEETKTKGGIIIPDTAKEKPAEGEIVAVGPGRNAEDGTKIALEVKVGDRVLFGKYSGTEVKIEGEEYLIMREDDVLG 92          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_PROAC (10 kDa chaperonin OS=Propionibacterium acnes GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 2
Query:   62 MAKRLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            MA  + P   RVLV+ +     T SG+++P+    K   GKV++ GPG  D  G  +P+ VKEGD V+  +YGG EVK   ++Y L     IL  +
Sbjct:    1 MATTIKPLEDRVLVQPLEAEQTTASGLVIPDTAKEKPQEGKVISAGPGRVDDKGTRVPMDVKEGDVVIFSKYGGTEVKYDGQEYLLLNARDILAVV 96          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_DECAR (10 kDa chaperonin OS=Dechloromonas aromatica (strain RCB) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   80 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            P   RV+V+++     T SGI++P+    K   G+V+AVGPG RD NGK I + VK GD VL  +Y G  VK+  ++  +  +E I+G L
Sbjct:    5 PLHDRVIVKRVEAERTTASGIVIPDSAGEKPDQGEVLAVGPGKRDDNGKQIALDVKVGDRVLFGKYAGQAVKVDGQEVLVMREEDIMGVL 94          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_BIFA0 (10 kDa chaperonin OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   62 MAKRLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 352
            M+  L P   +++V++    ++T SG+++P+    K   G+V+AVGPG RD  GK +P+ VK GD VL  +YGG EV    ++Y +     +L  ++D
Sbjct:    1 MSFPLTPLEDKIIVKQAEAETQTASGLIIPDNAKEKPQQGEVLAVGPGRRDDEGKRVPMDVKVGDKVLYSKYGGTEVHFKGEEYLIVSARDLLAVVND 98          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 2
Query:   74 LIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            L P   RV++E++    KT SGI+LP+    K   G+VVAVG G    NG+ I + VKEGD+V+  +Y G EVK   K+Y +  +  IL  +
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_THET8 (10 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groS PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   80 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            P   RV+V++I    KT  GI+LP+    K   GKV+AVG G    NG+ +P+ VKEGD V+  +YGG E+++  ++Y +  +  +L  L
Sbjct:   11 PLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVL 100          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_THET2 (10 kDa chaperonin OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=groS PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   80 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            P   RV+V++I    KT  GI+LP+    K   GKV+AVG G    NG+ +P+ VKEGD V+  +YGG E+++  ++Y +  +  +L  L
Sbjct:   11 PLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVL 100          
BLAST of DR403516 vs. ExPASy Swiss-Prot
Match: CH10_BORPD (10 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 2
Query:   74 LIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 346
            L P   RV+V+++    KT SGI++P+  + K   G+VVAVGPG +  +GK +PV +K GD VL  +Y G  VK+  ++  +  +E IL  +
Sbjct:    3 LRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGPGKKTEDGKVLPVDLKAGDKVLFGKYAGQSVKVDGEELLVIREEEILAVI 94          
The following BLAST results are available for this feature:
BLAST of DR403516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CH104_RHIME2.708e-1135.5610 kDa chaperonin 4 OS=Rhizobium meliloti GN=groS4... [more]
CH101_RHILO2.708e-1135.5610 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=... [more]
CH10_DESAA3.537e-1137.3610 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH10_PROAC4.619e-1138.5410 kDa chaperonin OS=Propionibacterium acnes GN=gr... [more]
CH10_DECAR4.619e-1141.1110 kDa chaperonin OS=Dechloromonas aromatica (stra... [more]
CH10_BIFA04.619e-1135.7110 kDa chaperonin OS=Bifidobacterium animalis subs... [more]
CH10_BACHD4.619e-1141.3010 kDa chaperonin OS=Bacillus halodurans GN=groS P... [more]
CH10_THET86.033e-1138.8910 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_THET26.033e-1138.8910 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_BORPD6.033e-1139.1310 kDa chaperonin OS=Bordetella petrii (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241F09 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403516 ID=DR403516; Name=DR403516; organism=Citrus sinensis; type=EST; length=589bp
GGGGATAAAGAAAAGAAGAAAGTTTTGGTGAAGTCCCCTCCTGTTTGTTC
GTGAAGCGAAAATGGCAAAGAGATTGATTCCAGCATTCAGTCGCGTTTTG
GTTGAAAAAATAATCCCTCCTTCCAAAACCAACTCCGGAATCTTACTTCC
TGAGAAAACAAGCAAGCTGATTTCTGGAAAAGTTGTTGCTGTGGGTCCTG
GAGCTCGTGATGTCAATGGAAAGTTTATTCCTGTAAGTGTGAAGGAAGGA
GATACTGTTCTTTTGCCCGAGTATGGTGGGGCTGAAGTTAAGCTTGGTGA
CAAAAAGTACCATCTGTACGAGGATGAGTCCATCCTGGGAACACTTCATG
ACCATTGAAAAATATTGCTCTTTGATTGCATCTAGTAATGGCAGCTTTAA
TAATTCAAAGTTGTCGGCTGGAGCAGCCTTGTGACTGAATATTAGTGCTA
TATACGTTTAAACTTATTTAGGACTTGGGAAGTGGTTTCATATAACTTGA
TGTACTAGTTCAGAAACTAATTTGCGACTGAGAATTGCTAAGGGCTGCAG
TTTATAGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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