DR403501

Overview
NameDR403501
Unique NameDR403501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 37/114 (32.46%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAK-APGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTET 343
            GALL  C IHK+  +A +A  KL  L+P N GY+ LL ++Y+ +  +   A +R  +++  + K  PG + I +    H+F + D+ H  S  +  +L+++  +M  AG+  ET
Sbjct:  460 GALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGYVQET 573          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 36/112 (32.14%), Postives = 66/112 (58.93%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTP-----HVFTSGDQLHPQSTAIYAMLEKLNGKMREAG 328
            ++LG+C +H +  +    +E   E+ PE  G +V + NIY+ + ++ +AA +R+ ++K+ ++K  G + I+VG T        F+SGD+ HP+S  IY M+E +  +M   G
Sbjct:  648 SMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMNLEG 759          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP201_ARATH (Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMRE 322
            + L AC  +KD   A    +K  EL+P+N G +VLL N+Y+A++ +     V+ V++K +  K  GC+LIE+      F SGD  HP   +I+ +L  L   M E
Sbjct:  446 SFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDLLMHMNE 550          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP268_ARATH (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   11 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLE 298
            LL AC    D    R A+E++ ELDP      V L+NIYS+  +  +AA VR+ +K + + K PG + I++      F SGD+ HPQS  IY +LE
Sbjct:  586 LLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPQSEDIYNILE 681          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   11 LLGACMIHKDT-NLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMR 319
            LLG C IH++   +A  A+  L  LDP++   + LLSN+Y+    + + + +R+ ++  KL K PGC+ +E+    HVF  GD+ HP+   IY  L  +  +M+
Sbjct:  778 LLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 881          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTP--HVFTSGDQLHPQSTAIYAMLEKL 304
            +L+ +C   + T L    S KL E +PEN G +V +SN Y+ E  + +   +R+++K + L K PGC+ I++ G    HVF + D+ H +   I  ML  L
Sbjct:  721 SLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALL 821          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   11 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKM 316
            LL AC    + +LA+ A+E + ++DP N   HVLL +++++  ++  AA +R  +KK  + K PG + IE+    H+F + D  HP+   IY +L  +  +M
Sbjct:  648 LLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQM 749          
The following BLAST results are available for this feature:
BLAST of DR403501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
PPR15_ARATH8.495e-1232.46Pentatricopeptide repeat-containing protein At1g06... [more]
PP345_ARATH1.109e-1132.14Pentatricopeptide repeat-containing protein At4g32... [more]
PP201_ARATH1.449e-1136.19Pentatricopeptide repeat-containing protein At2g44... [more]
PP268_ARATH4.216e-1140.63Putative pentatricopeptide repeat-containing prote... [more]
PP207_ARATH5.506e-1134.62Pentatricopeptide repeat-containing protein At3g02... [more]
PP431_ARATH9.392e-1134.65Pentatricopeptide repeat-containing protein At5g55... [more]
PP280_ARATH9.392e-1133.33Pentatricopeptide repeat-containing protein At3g53... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241E11 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403501 ID=DR403501; Name=DR403501; organism=Citrus sinensis; type=EST; length=746bp
GGGGGGTGCATTGCTTGGTGCTTGCATGATTCATAAAGACACAAACCTAG
CCCGTGTGGCTTCTGAAAAACTATTTGAATTAGACCCAGAAAATGTAGGA
TATCATGTCTTACTCTCAAATATTTATTCAGCTGAGAGAGACTATCTACA
GGCCGCAACAGTTCGACAAGTAGTTAAGAAGAGAAAGCTTGCAAAGGCTC
CTGGGTGCACTCTAATTGAGGTTGGTGGTACCCCACATGTCTTCACATCA
GGTGATCAGCTGCATCCCCAGTCAACTGCAATCTATGCAATGCTAGAGAA
GTTAAATGGAAAGATGAGAGAGGCTGGATTTCAGACAGAGACCGTCACAG
CTTTGCATGACGTGGAGGAGGAAGAGAAGGAGCTAATGATGAAGGTTCAC
AGTGAGAAGTTGGCTATAGCATTTGGCCTTATCGCCACTGAACCTGGAAC
TGAAATTAGGATTATTAAGAATCTCCGTGTTTGTTTAGACTGCCATACAG
CAACTAAATTTATATCCAAGGTTACAGGGAGGGTCATTGTGGTTAGGGAT
GCGAATAGATTCCACCATTTCAAGGATGGTGTATGTTCATGTGGAGACTA
CTGGTAAAAAGACACAAATGCATACCAGGTAGCCATTGGTCGGTCCTTCA
AATTTGTCTGCTGCACAGCTGCTGTTTAATGAGTCCAAATTTCCTCGAGT
CACCAACTATCCAGTGAAACCAGACGGGAAACCCATCCTACATGGC
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