DR403501

Overview
NameDR403501
Unique NameDR403501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42
Identity = 88/200 (44.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GALL +C +HK+T LA  A++K+FEL P + G H+ LSN Y+A+  +  AA  R++++ R   K  G + +E     H F +G++ H +S  IY  L +L  +M +AG+  +T                   SE+LAIAFGLI       IR++KNLRVC DCH A KF+S  T RVI+VRD NRFH F+DG CSC DYW
Sbjct:  389 GALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42
Identity = 87/200 (43.50%), Postives = 119/200 (59.50%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GALLGAC +H+D  L +  ++ L E  P+   YHVLLSNIY+A   +     VR  ++K    K    + +E  G  H F  GD+ HPQS AIY  L+++  K+R+ G+  +T +                 SEKLAIAFGLI   PG  IR++KNLR C DCH  +KF+S +T   I++RD NRFHHF++GVCSC ++W
Sbjct:  385 GALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.536e-42
Identity = 85/199 (42.71%), Postives = 115/199 (57.79%), Query Frame = 2
Query:   11 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTE-TVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            LLGAC +H D  L       L EL  E  G +VLL N YS    + +   +R ++K++++   PGC+ IE+ GT H F   D  HP+   IY ML ++N +++ AG+  E T                   SEKLAIAFG++ T PGT IR+ KNLR C+DCH   KF+S V  R+++VRD +RFHHFK G CSC D+W
Sbjct:  393 LLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.536e-42
Identity = 91/200 (45.50%), Postives = 122/200 (61.00%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            G+LLG+C IH +  LA  AS +LF L+P+N G +VLL++IY+  + + +   V+++++ R L K PG   +EV    + F S D+ +P    I+A L KL   M+E G+  +T                   SEKLA+AFGLI T  G  IRI KNLR+C DCH  TKFISK   + I+VRD NRFH FK+GVCSCGDYW
Sbjct:  458 GSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.032e-42
Identity = 86/199 (43.22%), Postives = 121/199 (60.80%), Query Frame = 2
Query:   11 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVT-AXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            LLG+C IH++  L  VA +KL +L+  N G +VL+++IYSA  D    A++R++++   L   PG + IE+G   H F   D++HP+S  IY+ L ++  +   AG++ E                     SEKLAIA+GL+ T  GT +RI KNLRVC DCH+ TK++SK   R I+VRD  RFHHF DG+CSC DYW
Sbjct:  383 LLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.029e-41
Identity = 85/199 (42.71%), Postives = 123/199 (61.81%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            +LL A  ++K+  L  +AS+K+ EL+  N G +VLLSNIY+   D+   + VRQ +K + + K PGC+++EV G  H F  GD+ HP+ T I A+ + ++ ++R AG++ +T                   SEK AIAFG+++ +    IRI+KNLRVC DCH  +  ISK+  R I+VRD NRFHHFKDG CSC  +W
Sbjct:  414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.029e-41
Identity = 84/200 (42.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            G+LL +C ++K+  LA VA+EKLFEL+PEN G HVLLSNIY+A + + + A  R++++   + K  G + I++    H F+ G+  HP+   I + L+ L  K R+ G++                      SEKLA+ FGL+     + +RI+KNLR+C+DCH   K  S  T R I+VRD NRFHHF DG CSCGD+W
Sbjct:  436 GSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.344e-41
Identity = 82/199 (41.21%), Postives = 123/199 (61.81%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            ALLGAC +  +  + +  +  L ++ P + G +V LSN+Y+++ ++ + + +R  +K++ + K PGC+LI++ G  H F   D  HP++  I +ML +++ K+R AG++  T                   SEK+A AFGLI+T PG  IRI+KNLR+C DCH++ K ISKV  R I VRD  RFHHF+DG CSC DYW
Sbjct:  448 ALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41
Identity = 86/198 (43.43%), Postives = 119/198 (60.10%), Query Frame = 2
Query:   11 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            LL AC +  DT   +  + KL EL+P +   +VLLSN+Y+A   + +    R ++K  K+ K PG + IEV    H+F   D+ + Q+  IY  ++ +   +++ G+  ET                   SEKLA+AFGL++T P T IR+IKNLRVC DCH A K+I+KV  R IV+RDANRFH FKDG+CSCGDYW
Sbjct:  793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.910e-41
Identity = 82/201 (40.80%), Postives = 124/201 (61.69%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCT-LIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GALLGAC IH +  +A +A+E LFEL+P+ +G ++LLSN+Y++  D+     VR+++K++ L K P  + +++  G  H F  G+  HP S  I   LE+L  ++   G+Q +  +                 +EKLA+AF L+ T   + I I+KNLR+CLDCH   +  S+VTG+VI++RD  RFHHF+ G CSCGD+W
Sbjct:  457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657          
The following BLAST results are available for this feature:
BLAST of DR403501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
PP429_ARATH2.073e-4244.00Putative pentatricopeptide repeat-containing prote... [more]
PP140_ARATH2.073e-4243.50Pentatricopeptide repeat-containing protein At2g01... [more]
PP267_ARATH3.536e-4242.71Pentatricopeptide repeat-containing protein At3g47... [more]
PP265_ARATH3.536e-4245.50Pentatricopeptide repeat-containing protein At3g46... [more]
PP284_ARATH6.032e-4243.22Pentatricopeptide repeat-containing protein At3g56... [more]
PP410_ARATH1.029e-4142.71Putative pentatricopeptide repeat-containing prote... [more]
PP364_ARATH1.029e-4142.00Pentatricopeptide repeat-containing protein At5g04... [more]
PP425_ARATH1.344e-4141.21Pentatricopeptide repeat-containing protein At5g48... [more]
PP347_ARATH2.292e-4143.43Pentatricopeptide repeat-containing protein At4g33... [more]
PP417_ARATH3.910e-4140.80Pentatricopeptide repeat-containing protein At5g44... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241E11 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403501 ID=DR403501; Name=DR403501; organism=Citrus sinensis; type=EST; length=746bp
GGGGGGTGCATTGCTTGGTGCTTGCATGATTCATAAAGACACAAACCTAG
CCCGTGTGGCTTCTGAAAAACTATTTGAATTAGACCCAGAAAATGTAGGA
TATCATGTCTTACTCTCAAATATTTATTCAGCTGAGAGAGACTATCTACA
GGCCGCAACAGTTCGACAAGTAGTTAAGAAGAGAAAGCTTGCAAAGGCTC
CTGGGTGCACTCTAATTGAGGTTGGTGGTACCCCACATGTCTTCACATCA
GGTGATCAGCTGCATCCCCAGTCAACTGCAATCTATGCAATGCTAGAGAA
GTTAAATGGAAAGATGAGAGAGGCTGGATTTCAGACAGAGACCGTCACAG
CTTTGCATGACGTGGAGGAGGAAGAGAAGGAGCTAATGATGAAGGTTCAC
AGTGAGAAGTTGGCTATAGCATTTGGCCTTATCGCCACTGAACCTGGAAC
TGAAATTAGGATTATTAAGAATCTCCGTGTTTGTTTAGACTGCCATACAG
CAACTAAATTTATATCCAAGGTTACAGGGAGGGTCATTGTGGTTAGGGAT
GCGAATAGATTCCACCATTTCAAGGATGGTGTATGTTCATGTGGAGACTA
CTGGTAAAAAGACACAAATGCATACCAGGTAGCCATTGGTCGGTCCTTCA
AATTTGTCTGCTGCACAGCTGCTGTTTAATGAGTCCAAATTTCCTCGAGT
CACCAACTATCCAGTGAAACCAGACGGGAAACCCATCCTACATGGC
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