DR403493

Overview
NameDR403493
Unique NameDR403493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403493 vs. ExPASy Swiss-Prot
Match: ETR1_CUCMR (Ethylene receptor 1 OS=Cucumis melo var. reticulatus GN=ETR1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.083e-65
Identity = 117/181 (64.64%), Postives = 144/181 (79.56%), Query Frame = 2
Query:    5 FTKFXXNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGHGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHG-QTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFQVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKGNCMRVGI 544
            FTKF     +  RNS GSGLGLAICKRFVNLMEGHIW+ESEG GKGCTA FIVKLGI + SN+S L +  K+  +   T+FPGLKVLVMD+NGVSRSVTKGLL+HLGC+V T  S+EE  +VVS EH+VVFMD+C PG+DGYE+A+ I +KF + HERP +V LTG++D +TK +C+R G+
Sbjct:  531 FTKFAQT-TVGPRNSGGSGLGLAICKRFVNLMEGHIWLESEGLGKGCTATFIVKLGIADQSNESKLPYTSKIHENSIHTSFPGLKVLVMDDNGVSRSVTKGLLVHLGCEVTTAGSIEEFLRVVSQEHKVVFMDICTPGVDGYELAIRIREKFAKCHERPFMVVLTGNSDKVTKESCLRAGM 710          

HSP 2 Score: 24.2534 bits (51), Expect = 1.083e-65
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  543 LDGVILKPVSLEXM 584
            +DG+ILKPVS++ M
Sbjct:  710 MDGLILKPVSIDKM 723          

HSP 3 Score: 23.483 bits (49), Expect = 1.083e-65
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  589 SVLSDLLEHRVXFES 633
            SVLS+L+E RV FE+
Sbjct:  725 SVLSELIERRVLFET 739          
BLAST of DR403493 vs. ExPASy Swiss-Prot
Match: ETR2_SOLLC (Ethylene receptor 2 OS=Solanum lycopersicum GN=ETR2 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.119e-62
Identity = 115/181 (63.54%), Postives = 141/181 (77.90%), Query Frame = 2
Query:    5 FTKFXXNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGHGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPV-HGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFQVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKGNCMRVGI 544
            F KF  NQ  A +NS+G+GLGLAICKRFVNLMEGHIWIESEG GKG TAIFIVKLGIP   N+S L F   +P  H Q  F GLKVLVMD+NG SR VTK LL+HLGCDV T+ S +EC ++++ EH+V+ MD  + G++ Y+VAV +H+KF +R ERPLIVALTG+TD +TK NC+RVG+
Sbjct:  529 FCKFAQNQEPATKNSAGTGLGLAICKRFVNLMEGHIWIESEGVGKGSTAIFIVKLGIPGRLNESKLPFTAGLPANHMQMTFQGLKVLVMDDNGFSRMVTKSLLVHLGCDVTTIGSGDECLRILTREHKVLIMDASITGMNCYDVAVSVHEKFGKRLERPLIVALTGNTDQVTKENCLRVGM 709          

HSP 2 Score: 25.409 bits (54), Expect = 1.119e-62
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  543 LDGVILKPVSLEXM 584
            +DGVILKPVS++ M
Sbjct:  709 MDGVILKPVSIDKM 722          
BLAST of DR403493 vs. ExPASy Swiss-Prot
Match: EIN4_ARATH (Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 59/172 (34.30%), Postives = 99/172 (57.56%), Query Frame = 2
Query:   44 NSSGSGLGLAICKRFVNLMEGHIWIESEGHGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTN--FPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFQVVSH---EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKGNCMRVGI 544
            N    GL L +C++   +M+G+IWI  + HG+  +   +++         S L+       H  +N    GL++ + D++ V+R+VTK LL  LGC+V  VSS  EC   +S+    ++VV +D+ +P +DG+EVA+ I  KF   H  PLI+ALT ST++  +  C+++G+
Sbjct:  571 NGIKEGLSLGMCRKLAQMMQGNIWISPKSHGQTQSMQLVLRFQTRPSIRRSILAGNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLLEKLGCEVTAVSSGFECLNALSNVEMSYRVVILDLQMPEMDGFEVAMKIR-KFC-GHHWPLIIALTASTEDHVRERCLQMGM 740          
BLAST of DR403493 vs. ExPASy Swiss-Prot
Match: ETR2_ARATH (Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.956e-15
Identity = 61/184 (33.15%), Postives = 89/184 (48.37%), Query Frame = 2
Query:   38 LRNSSGSGLG----LAICKRFVNLMEGHIWIESEGHGKGCTAIFIVKL----GIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFQVV-------SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKGNCMRVGI 544
            +R S G GLG      +CK+ V L+ G+I +     G   T   +++      I  H +  + +       H  +   GL+VL++D N  +R+VT+ LL  LGCDV  VSS  +C   +       S   QVV +D+ +  +DGYEVA+ I     R    PLIVA T S D      C ++GI
Sbjct:  567 VRFSGGYGLGQDLSFGVCKKVVQLIHGYISVVPGSDGSPETMSLLLRFRRRPSISVHGSSESPAPDHHAHPHSNSLLRGLQVLLVDTNDSNRAVTRKLLEKLGCDVTAVSSGFDCLTAIAPGSSSPSTSFQVVVLDLQMAEMDGYEVAMRI-----RSRSWPLIVATTVSLDEEMWDKCAQIGI 745          
BLAST of DR403493 vs. ExPASy Swiss-Prot
Match: ERS1_ARATH (Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 2
Query:    5 FTKFXXNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGHGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQT 238
            FTKF   +    RN SG GLGLA+CKRFV LM G++WIESEG  KGCTA FI++LGI    + S+ S    +    QT
Sbjct:  531 FTKFVQPRTGTQRNHSGGGLGLALCKRFVGLMGGYMWIESEGLEKGCTASFIIRLGICNGPSSSSGSMALHLAAKSQT 608          
The following BLAST results are available for this feature:
BLAST of DR403493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ETR1_CUCMR1.083e-6564.64Ethylene receptor 1 OS=Cucumis melo var. reticulat... [more]
ETR2_SOLLC1.119e-6263.54Ethylene receptor 2 OS=Solanum lycopersicum GN=ETR... [more]
EIN4_ARATH2.297e-2034.30Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 ... [more]
ETR2_ARATH4.956e-1533.15Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR... [more]
ERS1_ARATH1.883e-1452.56Ethylene response sensor 1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241D21 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241D21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403493 ID=DR403493; Name=DR403493; organism=Citrus sinensis; type=EST; length=758bp
GGGATTTACAAAATTTGNNNNAAATCAAGCAATTGCACTAAGAAATTCTA
GTGGCAGTGGACTTGGCCTGGCTATTTGTAAGAGGTTTGTGAATCTTATG
GAGGGACATATCTGGATTGAAAGTGAAGGTCATGGAAAGGGTTGTACTGC
CATCTTCATTGTAAAACTTGGGATTCCGGAGCACTCAAATGATTCTAACC
TCTCCTTTATTCCAAAAATGCCGGTACACGGACAGACCAATTTTCCAGGG
CTTAAAGTACTTGTCATGGATGAAAATGGTGTTAGCAGGTCAGTGACTAA
GGGACTTCTGTTGCACCTGGGATGTGATGTAATGACGGTGAGCTCTGTTG
AGGAGTGCTTCCAAGTTGTTTCTCACGAACACCAGGTGGTCTTCATGGAC
GTTTGCGTGCCTGGAATTGATGGTTATGAAGTCGCTGTCCATATACATGA
CAAATTTACGAGGCGTCATGAAAGGCCATTAATAGTAGCCCTTACTGGAA
GTACTGACAATTTGACCAAGGGTAATTGCATGAGGGTTGGAATTGGATGG
AGTTATCCTAAAACCTGTTTCACTTGAANNNATGANGGAGTGTTTTGTCA
GATCTTTTGGAACACCGGGTNNNCTTTGAGTCCATGTAAAAACGGAGAAT
GCTTCTACACCTTTTAAAGTGGGGGAAAAAAATGTTTAAGGTAACGTGAG
AGNNTTCTCTACAGCATTTGGTTTTTGATAGATACTACTTTGTGATGGAG
CTTTTCAA
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