DR403492

Overview
NameDR403492
Unique NameDR403492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.485e-35
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  127 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 465
            EG V  CH+ E W  +LQ++ +TK+LV VDFTA+WCGPCR I P    L+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 1
Query:  121 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            A EG+VI CHTVE W E+L+ +NE+K+L+V+DFTA+WC PCRFIAP  A LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVGA KEE+   + KH    +A
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.120e-34
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  106 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 456
            A  AA   G+VI  H++E W  Q++++N  K+LVV+DFTASWCGPCR +AP  A LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   10 ATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  112 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP    LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:    1 MAATAELIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  112 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP    LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  112 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP    LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE++  + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.151e-22
Identity = 47/109 (43.12%), Postives = 75/109 (68.81%), Query Frame = 1
Query:  121 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 447
            +E  +V+   +   W     +  E+ +L+VVDF+ASWCGPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++GAKK+EL++ ++K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.167e-22
Identity = 43/97 (44.33%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  151 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 441
            T E+W+++L +++   ++VV +F+A+WCGPC+ +APF   L++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VGA K ELQ+ +
Sbjct:   30 TKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.483e-21
Identity = 42/97 (43.30%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  151 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 441
            T E W+++L +++   ++V+ +F+A WCGPC+ IAP+   L++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VGA K EL + I
Sbjct:   31 TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.729e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  160 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 441
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of DR403492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXH_PICMA2.485e-3558.41Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH3_ARATH1.233e-3458.62Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.120e-3457.26Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_BRARA3.713e-3153.66Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL3.713e-3153.66Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA3.713e-3153.66Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH2_ARATH3.151e-2243.12Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH9_ARATH9.167e-2244.33Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC3.483e-2143.30Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
THIO_HORSE1.729e-2051.06Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241D20 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241D20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403492 ID=DR403492; Name=DR403492; organism=Citrus sinensis; type=EST; length=646bp
CNGGCCGGGGAAAGANNNNNCATACGCAAANNNCCAAGAGCAAGAAAGCG
AGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGC
GGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCAC
ACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACA
GCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCA
TTGCTCCTTTCTTGGCAGGGCTGGCCAAGAAACTGCCTAATGTCCTGTTT
CTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGT
GGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACA
AGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCAT
CTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGG
CTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTA
TTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAA
TTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAACTTAA
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