DR403492

Overview
NameDR403492
Unique NameDR403492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 37/96 (38.54%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  169 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 456
            EQL + +  K ++++DF A+WCGPC+ IAP    LA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  199 QLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 456
            +LV+VDF A WCGPC+ IAPF    +K    ++F+KVDVDE+  V     + +MPTF   K G  VD ++GA    L+Q I K+ A
Sbjct:   19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 42/97 (43.30%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  166 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 453
            N QL K++   +LVV+DF A+WCGPC+ I+P LA L+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   12 NGQLTKASG--KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  178 QKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 453
            Q +  + +LVV+DF A+WCGPC+ I+P L  L+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   22 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  202 LVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 450
            LV++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   97 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 447
            P +AE+   EEG V      E + E L+ + E  +LV VDF+A WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  V  +PTF F K  + V +  GA  E+L+++IA+
Sbjct:  434 PFEAEIETLEEGMVRVIKDKEEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIAE 548          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  169 EQLQKSNETK------QLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 453
            +Q+  S+E K      +LVVVDF A+WCGPC+ IAP     +    +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VGA   +L+ +I  +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 35/98 (35.71%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  169 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 456
            ++  K   + +++++DF A+WCGPCR I+P     ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VGA    L+  + K LA
Sbjct:    9 DEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  166 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            N  L++S +  +L+++DF A+WCGPCR I+P     + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD V GA ++ + + I +H +   A
Sbjct:   13 NNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPA 112          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  199 QLVVVDFTASWCGPCRFIAPFLAGLAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 450
            +LVV+DF A WCGPC+ IAP L  LA +  + V+ LKV+VDE + +  ++ V +MPTF+F+K G +++  VG   ++L + + KH
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
The following BLAST results are available for this feature:
BLAST of DR403492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO1_CAEEL1.282e-1538.54Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_PLAF72.187e-1545.35Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO2_DROYA2.187e-1543.30Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_DROME2.856e-1541.94Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_CHLTR3.730e-1545.24Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
TXND2_RAT6.363e-1538.46Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TRX1_SCHPO6.363e-1539.60Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_COPCM6.363e-1535.71Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
NGLY1_CAEEL8.310e-1536.63Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIOT_DROME1.418e-1443.53Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAC-PNP1241D20 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241D20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403492 ID=DR403492; Name=DR403492; organism=Citrus sinensis; type=EST; length=646bp
CNGGCCGGGGAAAGANNNNNCATACGCAAANNNCCAAGAGCAAGAAAGCG
AGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGC
GGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCAC
ACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACA
GCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCA
TTGCTCCTTTCTTGGCAGGGCTGGCCAAGAAACTGCCTAATGTCCTGTTT
CTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGT
GGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACA
AGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCAT
CTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGG
CTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTA
TTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAA
TTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAACTTAA
back to top