CX053417

Overview
NameCX053417
Unique NameCX053417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: GLYG2_SOYBN (Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.522e-39
Identity = 91/233 (39.06%), Postives = 122/233 (52.36%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY-XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQK--GIIVRVEEELRVLSP 843
            LNAL+P  R+ESE G  E W+ N++  QCA VA+ R  + +  L  PSYTN P+  Y+ QG GI G +FPGCP TY                  HQKV + REGDL+A+PTG A W+YN+  + +V V+++D  + +NQLDQ  R+FYL GN Q Q                            N+  GF    L EAF  N  ++  LQG   ++  G IV V+  LRV +P
Sbjct:   33 LNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGNGIFGMIFPGCPSTYQEPQESQQRGRSQRPQDRHQKVHRFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGN-QEQEFLKYQQQQQGGSQSQKGKQQEEENEGSNILSGFAPEFLKEAFGVNMQIVRNLQGENEEEDSGAIVTVKGGLRVTAP 264          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: GLUA2_ORYSJ (Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.007e-38
Identity = 93/239 (38.91%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY--------XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQ-PQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQKGIIVRVEEELRVLSP 843
            L A EP + V S+AG TEF+D ++E  QC  V+V R  I+ RGL++P YTN   L Y++QGRGI G  FPGCPETY                         HQK+ + R+GD++ALP G A+W YNDG   +V + + D+ N  NQLD   R F L GN + PQ                            N+F GF   LL+EAF  +  +  +LQ    Q+G IVRVE  L +L P
Sbjct:   51 LQAFEPIRSVRSQAGTTEFFDVSNELFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPETYQQQFQQSGQAQLTESQSQSHKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDINNGANQLDPRQRDFLLAGNKRNPQ-----------------AYRREVEEWSQNIFSGFSTELLSEAFGISNQVARQLQCQNDQRGEIVRVERGLSLLQP 272          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: GLUA1_ORYSJ (Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.244e-38
Identity = 92/239 (38.49%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY--------XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQ-PQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQKGIIVRVEEELRVLSP 843
            L A EP + V S+AG TEF+D ++EQ QC  V+V R  I+ RGL++P YTN   L Y++QGRGI G  FPGCPE+Y                         HQK+ + R+GD++ALP G A+W YNDG   +V + + D+ N  NQLD   R F L GN + PQ                            N+F GF   LL+EA   +  +  +LQ    Q+G IVRVE  L +L P
Sbjct:   51 LQAFEPIRSVRSQAGTTEFFDVSNEQFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPESYQQQFQQSGQAQLTESQSQSQKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDLNNGANQLDPRQRDFLLAGNKRNPQ-----------------AYRREVEERSQNIFSGFSTELLSEALGVSSQVARQLQCQNDQRGEIVRVEHGLSLLQP 272          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: GLUB1_ORYSJ (Glutelin type-B 1 OS=Oryza sativa subsp. japonica GN=GluB1-A PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 3.828e-38
Identity = 88/234 (37.61%), Postives = 119/234 (50.85%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY----XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQKGIIVRVEEELRVLSP 843
            L A EP ++V SEAGVTE++D+ +E  QC    V R  IQ +GL+VP YTN P + Y++QGRG  G  FPGCP TY                     HQK+ Q R+GD+VALP G A+W YNDG + +V V + DV N+ NQL+   ++F L GN                                N+F GF   +L+EA   N     +LQ    Q+G I+ V+  L++L P
Sbjct:   50 LQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNDGDAPIVAVYVYDVNNNANQLEPRQKEFLLAGN------------NNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSEALGINAVAAKRLQSQNDQRGEIIHVKNGLQLLKP 271          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: GLYG3_SOYBN (Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.528e-38
Identity = 88/233 (37.77%), Postives = 122/233 (52.36%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQ-LXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQG--PQMQKGIIVRVEEELRVLSP 843
            LNAL+P  R+ESE G  E W+ N++  QCA VA+ R  + +  L  PSYTN P+  Y+ QG GI G +FPGCP T+                 HQK+   REGDL+A+PTG A W+YN+  + +V V+L+D  +  NQLDQ  R+FYL GN + + L                           ++  GF    L  AF  +  ++ KLQG   + +KG IV V+  L V+SP
Sbjct:   36 LNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNAPQEIYIQQGSGIFGMIFPGCPSTF--EEPQQKGQSSRPQDRHQKIYHFREGDLIAVPTGFAYWMYNNEDTPVVAVSLIDTNSFQNQLDQMPRRFYLAGNQEQEFLQYQPQKQQGGTQSQKGKRQQEEENEGGSILSGFAPEFLEHAFVVDRQIVRKLQGENEEEEKGAIVTVKGGLSVISP 266          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: 11S2_SESIN (11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.900e-37
Identity = 83/240 (34.58%), Postives = 123/240 (51.25%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY---------XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYL-GGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQKGIIVRVEEELRVLSP 843
            ++  +P  R++SE G TE WD+  EQ QCA +   R  I+  GL +P+Y  +P L Y+ +G+G+   + PGC ETY                          HQKV ++R+GD+VA+P+G+A+W YNDG  +LV V++ DV +  NQLDQ  R FYL GG P+                              N+FR FD  LL+EAFN   + I ++Q  + ++G+IV   E +  + P
Sbjct:   39 ISGAQPSLRIQSEGGTTELWDERQEQFQCAGIVAMRSTIRPNGLSLPNYHPSPRLVYIERGQGLISIMVPGCAETYQVHRSQRTMERTEASEQQDRGSVRDLHQKVHRLRQGDIVAIPSGAAHWCYNDGSEDLVAVSINDVNHLSNQLDQKFRAFYLAGGVPR-----------------SGEQEQQARQTFHNIFRAFDAELLSEAFNVPQETIRRMQSEEEERGLIVMARERMTFVRP 261          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: SSG1_AVESA (12S seed storage globulin 1 OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.233e-37
Identity = 84/238 (35.29%), Postives = 124/238 (52.10%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY--------XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQKGIIVRVEEELRVLSP 843
            L A EP ++V S+AG+TE++D+ +EQ +CA V+V R  I+ +GL++P Y N P L Y++QGRG  G  FPGCP T+                         HQ+V  I++GD+VALP G  +W YNDG + +V V + DV N+ NQL+   ++F L GN + +                            N+F GF  +LL+EA   +     K+Q    Q+G I+RV + L+ L P
Sbjct:   50 LQAFEPLRQVRSQAGITEYFDEQNEQFRCAGVSVIRRVIEPQGLLLPQYHNAPGLVYILQGRGFTGLTFPGCPATFQQQFQQFDQARFAQGQSKSQNLKDEHQRVHHIKQGDVVALPAGIVHWCYNDGDAPIVAVYVFDVNNNANQLEPRQKEFLLAGNNKRE-----------------------QQFGQNIFSGFSVQLLSEALGISQQAAQKIQSQNDQRGEIIRVSQGLQFLKP 264          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: GLUA3_ORYSJ (Glutelin type-A 3 OS=Oryza sativa subsp. japonica GN=GLUA3 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.233e-37
Identity = 91/238 (38.24%), Postives = 121/238 (50.84%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY--------XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQKGIIVRVEEELRVLSP 843
            L A EP + V S+AG TEF+D ++E  QC  V V R  I+ RGL++P Y+N   L YV+QGRGI G  FPGCPETY                         HQK+ + ++GD+VALP G A+W YNDG + +V + + D+ NS NQLD   R F+L GN +                              N+F GF   LL+EA   +  +  +LQ    Q+G IVRVE  L +L P
Sbjct:   50 LQAFEPIRTVRSQAGTTEFFDVSNELFQCTGVFVVRRVIEPRGLLLPHYSNGATLVYVIQGRGITGPTFPGCPETYQQQFQQSEQDQQLEGQSQSHKFRDEHQKIHRFQQGDVVALPAGVAHWCYNDGDAPIVAIYVTDIYNSANQLDPRHRDFFLAGNNK---------------IGQQLYRYEARDNSKNVFGGFSVELLSEALGISSGVARQLQCQNDQRGEIVRVEHGLSLLQP 272          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: SSG2_AVESA (12S seed storage globulin 2 OS=Avena sativa PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.231e-36
Identity = 83/238 (34.87%), Postives = 124/238 (52.10%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY--------XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQMQKGIIVRVEEELRVLSP 843
            L A EP ++V S+AG+ E++D+ +EQ +CA V+V R  I+ +GL++P Y N P L Y++QGRG  G  FPGCP T+                         HQ+V  I++GD+VALP G  +W YNDG + +V V + DV N+ NQL+   ++F L GN + +                            N+F GF  +LL+EA   +  +  K+Q    Q+G I+RV + L+ L P
Sbjct:   50 LQAFEPLRQVRSQAGIIEYFDEQNEQFRCAGVSVIRRVIEPQGLLLPQYHNAPGLVYILQGRGFTGLTFPGCPATFQQQFQPFDQAQFAEGQSQSQNLKDEHQRVHHIKQGDVVALPAGIVHWCYNDGDAPIVAVYVFDVNNNANQLEPRQKEFLLAGNNKRE-----------------------QQFGQNIFSGFSVQLLSEALGISQQVAQKIQSQNDQRGEIIRVSQGLQFLKP 264          
BLAST of CX053417 vs. ExPASy Swiss-Prot
Match: GLYG1_SOYBN (Glycinin G1 OS=Glycine max GN=GY1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.680e-36
Identity = 85/233 (36.48%), Postives = 120/233 (51.50%), Query Frame = 1
Query:  154 LNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY-XXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNANPDLISKLQGPQ--MQKGIIVRVEEELRVLSP 843
            LNAL+P  R+ESE G+ E W+ N++  QCA VA+ R  + +  L  PSYTN P+  Y+ QG+GI G ++PGCP T+                  HQK+   REGDL+A+PTG A W+YN+  + +V V+++D  + +NQLDQ  R+FYL GN Q Q                            ++  GF    L  AF+ +  +   LQG      KG IV V+  L V+ P
Sbjct:   36 LNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGN-QEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKP 267          
The following BLAST results are available for this feature:
BLAST of CX053417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLYG2_SOYBN4.522e-3939.06Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2[more]
GLUA2_ORYSJ1.007e-3838.91Glutelin type-A 2 OS=Oryza sativa subsp. japonica ... [more]
GLUA1_ORYSJ2.244e-3838.49Glutelin type-A 1 OS=Oryza sativa subsp. japonica ... [more]
GLUB1_ORYSJ3.828e-3837.61Glutelin type-B 1 OS=Oryza sativa subsp. japonica ... [more]
GLYG3_SOYBN8.528e-3837.77Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1[more]
11S2_SESIN1.900e-3734.5811S globulin seed storage protein 2 OS=Sesamum ind... [more]
SSG1_AVESA4.233e-3735.2912S seed storage globulin 1 OS=Avena sativa PE=2 S... [more]
GLUA3_ORYSJ4.233e-3738.24Glutelin type-A 3 OS=Oryza sativa subsp. japonica ... [more]
SSG2_AVESA1.231e-3634.8712S seed storage globulin 2 OS=Avena sativa PE=3 S... [more]
GLYG1_SOYBN4.680e-3636.48Glycinin G1 OS=Glycine max GN=GY1 PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_5H09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-5H09-O18-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053417 ID=CX053417; Name=CX053417; organism=Citrus sinensis; type=EST; length=851bp
TTCAAAATGGCTTCCACTTATTTGCTTTGTTTAGGGCTTGGGTTTCTAAT
TCTCTTCCACGCCTGCTTTGCTCAGATAGCGCAGGGAACAGACGCAACTC
GGGAGCAACAGCAACAGCAGCAACGCTTCCAAACCCAGTGTAATATCCAG
GACCTCAACGCCCTCGAACCCCAACAACGGGTAGAGTCCGAAGCTGGCGT
CACAGAGTTCTGGGACCAGAACGACGAGCAGTTACAATGCGCCAATGTTG
CCGTGTTTCGCCACCGTATCCAACAGAGAGGCCTCGTTGTGCCTTCATAC
ACCAACACTCCTGAGCTCTTCTATGTTGTTCAAGGTAGAGGCATTCACGG
TGCTGTATTCCCCGGATGTCCCGAGACATACCAAGAATCACAGCAAAGGT
CGTCAGAGAGTCAGAGTAGATCCCAAGATCAACACCAAAAAGTTAGACAA
ATACGTGAGGGTGATCTGGTTGCATTGCCTACTGGATCGGCTAACTGGAT
TTACAACGATGGCCCATCAGAGCTTGTTGTGGTCGCTCTTGTTGATGTTG
GCAATTCTGATAACCAGCTTGATCAGTTCTTGAGGAAATTCTACCTTGGT
GGCAACCCACAACCACAACTCCAAGGTTACAGTCAAAGTCAAGGCAGCAG
ATATCAGGGAAGCCAAGGCGGGGAGGGTGGCGACCGCAGCAGGAGAGGTG
GCAATCTCTTCCGCGGCTTTGACGAGCGTCTGTTGGCTGAGGCCTTCAAC
GCGAACCCAGATCTAATCAGTAAACTGCAGGGGCCACAGATGCAGAAGGG
GATTATTGTCAGAGTCGAGGAAGAGCTGAGAGTACTGTCACCTCAAAGAG
G
back to top