DR403426

Overview
NameDR403426
Unique NameDR403426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig160 contig Csv1_Contig160:1051..1800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.191e-21
Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = 2
Query:   86 KVIGAYSVQ-AKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYTH 565
            K+I   +++  KW   G+VP+ +EY+            I  S +G+G+   KE FEW+ + PK+V+      RLM D+   E + ++G+ A+A+  Y  +HGV+KEEA +  E+   +  K +NEE  +K T + R +L   +N AR++D +Y  DD Y H
Sbjct:  379 KIIARKNLELVKWARGGHVPSFDEYIESGGAEIGTYATIACSIMGLGEIGKKEAFEWLISRPKLVRILGAKTRLMDDIADFEEDMEKGYTANALNYYMNEHGVTKEEASRELEKMNGDMNKIVNEE-CLKITTMPRRILMQSVNYARSLDVLYTADDVYNH 538          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 53/153 (34.64%), Postives = 87/153 (56.86%), Query Frame = 2
Query:   98 AYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDD 553
            A+ V+AKWF+ GY+PT EEYM   + S     V+ ++++ +G+  TKE  E I +NP +V +A+ I RL  D+   + E + G   S +ECY  ++ G + +EA     ++++ AWK +N E  + P   +R      LN+AR +  +Y  DD
Sbjct:  405 AFLVEAKWFNSGYLPTTEEYMKNGVVSSGVHLVMLHAYILLGEELTKEKVELIESNPGIVSSAATILRLWDDLGSAKDENQDGTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRE-CLNPCPFSRSFSKACLNIARTVPLMYSYDD 556          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   89 VIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGT----ILNLARAIDFIYKEDDGY 559
            +I AY V+AKW+   Y P +EEY+   L S     +IT S+L   +   K+  E++ +NP +V  +S I RL  D+     E +RG V  +I+CY  + G S+E A +  ++ +   WK +N     K +    PL GT    +LNL R   F+Y   DG+
Sbjct:  414 LIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARQHIKDMMRQMWKKVNAYTADKDS----PLTGTTTEFLLNLVRMSHFMYLHGDGH 570          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 51/171 (29.82%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  110 QAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISN-NPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY-THSYLIKDQIASVLGDHVP 616
            +AKWF  GY PT++EY+     S     ++ +++    +  TKE  E + + +P +V+ AS+I RL  D+     E KRG V  +I+CY    G S++EA +  +  ++ +WK++N E     +  +   +    NL RA  FIY+  DG+ + + L K+++  ++   +P
Sbjct:  451 EAKWFYSGYKPTLQEYVENGWLSVGGQVILMHAYFAFTNPVTKEALECLKDGHPNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYMHDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGDGHASQNNLSKERVLGLIITPIP 621          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17
Identity = 51/173 (29.48%), Postives = 92/173 (53.18%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY-THSYLIKDQIASVLGDHVP 616
            Y V+AKW+S  Y P+++EY+  A  S     ++ +++  + +  TKE  + +   P +++ +S+I RL  D+     E KRG V  AI+CY  + G S+E A +  +  ++  WK +N++     +  +   +   LNLAR    +Y+  DG+   +   KD+I S+L   +P
Sbjct:  422 YLVEAKWYSNKYRPSLQEYIENAWISIGAPTILVHAYFFVTNPITKEALDCLEEYPNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNETGASEEGAREYIKYLISATWKKMNKD-RAASSPFSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIP 593          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.180e-17
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 2
Query:   98 AYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFE-WISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEE---LMMKPTVVARPLLGTILNLARAIDFIYKEDDGY--THSYLIKDQIASVLGDHVP 616
            AY V+AKW+  GY P++EEYM  A  S +   ++ + +       + ++ E  +     VV+ ++ + RL  D+     E  RG V  +++CY  + GVS+EEA    ++ +++ W ++N E        ++++R  + T +NLAR    +Y+  DG+       I D++ ++L D +P
Sbjct:  418 AYLVEAKWYKGGYKPSVEEYMQNAWISISAPTMLIHFYCAFSGQISVQILESLVQQQQDVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHETGVSEEEARTHVQQMISHTWDEMNYEARTAARSSSLLSRRFVETAMNLARMSQCMYQHGDGHGCPDKAKIVDRVQTLLVDPIP 596          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 50/177 (28.25%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   98 AYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPK-VVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDIN-EELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY--THSYLIKDQIASVLGDHVP 616
            AY V+AKW+  G+ P +EEYM  A  S +   +  + +    D  + +V E +S + + VV+ +S + RL  D+     E  RG V  +I+CY  + G S+++A     + + + W ++N E++    +++    + T++NLAR    +Y+  DG+       I D++ S+L + +P
Sbjct:  413 AYLVEAKWYKSGHKPNLEEYMQNARISISSPTIFVHFYCVFSDQLSIQVLETLSQHQQNVVRCSSSVFRLANDLVTSPDELARGDVCKSIQCYMSETGASEDKARSHVRQMINDLWDEMNYEKMAHSSSILHHDFMETVINLARMSQCMYQYGDGHGSPEKAKIVDRVMSLLFNPIP 589          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSDV_ABIGR (Abietadiene synthase, chloroplastic OS=Abies grandis GN=ag22 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 2
Query:   98 AYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMK--PTVVARPLLGTILNLARAIDFIYKEDDGYT--HSYLIKDQIASVL 601
            AY+ +A+W    YVP+  EY+  A  S A   V+  S L  G+  T EV   I    + ++   +  RL+ D + ++ E+ +G VASAI+CY K H  +S+EEA++     + NA +++N E +    P +  R     +   AR +   Y + DG T  H   IK+ + + L
Sbjct:  695 AYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKR----LVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCL 863          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 53/171 (30.99%), Postives = 87/171 (50.88%), Query Frame = 2
Query:   98 AYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYT--HSYLIKDQIASVL 601
            AY+ +A+W +  YVP+ +EY+  A  S A   V+  S L  G+  T +V   I    + ++   +  RL+ D + +E E+ +G VASA++CY K H  +S+EEA+K     + NA  ++N E  +    V       +   AR +   Y + DG T  H   IK+ + + L
Sbjct:  685 AYTKEAEWSAARYVPSFDEYIDNASVSIALGTVVLISALFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKDHPEISEEEALKHVYTVMENALDELNRE-FVNNREVPDSCRRLVFETARIMQLFYMDGDGLTLSHETEIKEHVKNCL 854          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 51/174 (29.31%), Postives = 90/174 (51.72%), Query Frame = 2
Query:   89 VIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYT--HSYLIKDQIASVL 601
            ++ A++ +A+W +  YVP+ +EY+  A  S +   ++  S L  G+  T +V   I    + ++   +  RL+ D + +E E+ +G VASA++CY K+H  +S+EEA+K     + NA  ++N E +     V       +   AR +   Y E DG T  H   IK+ + + L
Sbjct:  690 LLAAHTKEAEWSAARYVPSFDEYIENASVSISLGTLVLISVLFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKEHPEISEEEALKHVYTVMENALDELNREFVNNRD-VPDSCRRLVFETARIMQLFYMEGDGLTLSHEMEIKEHVKNCL 862          
The following BLAST results are available for this feature:
BLAST of DR403426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
BARS_ARATH1.191e-2134.16Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
LINS_ARATH7.723e-2134.64Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
RLC1_CITLI3.587e-1834.16(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
TPS1_CANSA4.685e-1829.82(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
MYRS_QUEIL3.037e-1729.48Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
MYRS2_ARATH5.180e-1727.93Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
MYRS1_ARATH1.507e-1628.25Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
TPSDV_ABIGR9.769e-1631.21Abietadiene synthase, chloroplastic OS=Abies grand... [more]
TPSD1_PICAB1.276e-1530.99Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
TPSD2_PICAB1.666e-1529.31Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403426 ID=DR403426; Name=DR403426; organism=Citrus sinensis; type=EST; length=750bp
GGGGATATTAAAATTTAAAAACTTATTTCTTATTATTGTTTTTATAACGG
CTAAGGTTTAGCTGCGTTTTGCTTCTCAGAATCAAAAAGTAATTGGAGCA
TACTCTGTTCAAGCCAAATGGTTCAGTGAAGGTTACGTTCCAACAATTGA
GGAGTATATGCCTATTGCACTAACAAGTTGTGCTTACACATTCGTCATAA
CAAATTCCTTCCTTGGCATGGGTGATTTTGCAACTAAAGAGGTTTTTGAA
TGGATCTCCAATAACCCTAAGGTTGTAAAAGCAGCATCAGTTATCTGCAG
ACTCATGGGTGACATGCAAGGTCATGAGTTTGAGCAGAAGAGAGGACATG
TTGCGTCAGCTATTGAATGTTACACGAAGCAGCATGGTGTCTCTAAGGAA
GAGGCAATTAAAATGTTTGAAGAAGAAGTTGCAAATGCATGGAAAGATAT
TAACGAGGAGTTGATGATGAAGCCAACCGTCGTTGCCCGACCACTGCTCG
GGACGATTCTTAATCTTGCTCGTGCAATTGATTTTATTTACAAAGAGGAC
GACGGCTATACGCATTCTTACCTAATTAAAGATCAAATTGCTTCTGTGCT
AGGAGACCACGTTCCATTTTGACGACTAGTTCTATACTTCTATTAATAAT
ATTTTCAGTTCCTTGGTTTGTGTTTGAAGGAAATACGGTGTATCGTATTG
GTCTGTACTAATAAATATTTTATATTTTTATTGTTATTTAAAGATTTTCC
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