DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLT2 (Protein recA OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=recA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.543e-28
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS 649
            DR+RAL+AA+  I   FG  S+  LG    A  + T  +G L+LDLALG GG+PKGRIVEIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DP+Y+
Sbjct:    5 DRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYA 105

HSP 2 Score: 33.113 bits (74), Expect = 2.543e-28
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANINDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_COLP3 (Protein recA OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=recA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.544e-28
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+++AL AA+  I   FGK S+ +LG      VET  +G L LD+ALG GGLP GR+VEI+GPESSGKTTL L  IAE Q+ G     +DAEHA DP Y++ L
Sbjct:    4 DKEKALSAALAQIERQFGKGSIMKLGDNTTMDVETISTGSLGLDIALGAGGLPMGRVVEIYGPESSGKTTLTLEVIAEAQRNGKVCAFIDAEHALDPVYAEKL 106

HSP 2 Score: 40.0466 bits (92), Expect = 2.544e-28
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEI D + RSGAID+
Sbjct:  107 GVNIDELLISQPDTGEQALEIVDMLTRSGAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_WOLWR (Protein recA OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=recA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.310e-28
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + R  D+Q+ALD A++ I  +FGK ++ +L       ++T  +G + LD ALG GGLPKGRI+EIFGPESSGKTTLALH IAE QK GG+   +DAEHA D  Y++ L
Sbjct:    6 EERNSDKQKALDNAISQIEKAFGKGAIMKLKQNPVEKIDTISTGSIALDSALGVGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKL 113

HSP 2 Score: 31.9574 bits (71), Expect = 3.310e-28
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV  ++L++   D GE AL I + +  SGA+D+
Sbjct:  114 GVSTDDLVISQPDTGEQALHIVEYLVCSGAVDV 146

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_WOLPM (Protein recA OS=Wolbachia pipientis wMel GN=recA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.310e-28
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + R  D+Q+ALD A++ I  +FGK ++ +L       ++T  +G + LD ALG GGLPKGRI+EIFGPESSGKTTLALH IAE QK GG+   +DAEHA D  Y++ L
Sbjct:    6 EERNSDKQKALDNAISQIEKAFGKGAIMKLKQNPVEKIDTISTGSIALDSALGVGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKL 113

HSP 2 Score: 31.9574 bits (71), Expect = 3.310e-28
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV  ++L++   D GE AL I + +  SGA+D+
Sbjct:  114 GVSTDDLVISQPDTGEQALHIVEYLVCSGAVDV 146

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLMU (Protein recA OS=Chlamydia muridarum GN=recA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.310e-28
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS 649
            DR+RAL+AA+  I   FG  S+  LG    A  + T  +G L+LDLALG GG+PKGRI+EIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DP+Y+
Sbjct:    5 DRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYA 105

HSP 2 Score: 33.113 bits (74), Expect = 3.310e-28
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANINDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSYCK (Protein recA OS=Psychrobacter cryohalolentis (strain K5) GN=recA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.311e-28
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK ++  LG     L V+   +G L LD+ALG GGLPKGRIVEI+GPESSGKTT+ L AIA  QK GG    +DAEHA DP Y++ L
Sbjct:    4 NKAKALKAALAQIEKQFGKNTIMHLGDNSATLDVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIAACQKQGGVCAFIDAEHALDPVYARKL 107

HSP 2 Score: 41.2022 bits (95), Expect = 3.311e-28
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+ ++L++   DNGE ALEI D + RSGAID+
Sbjct:  108 GVNTDDLLLSQPDNGEQALEITDMLVRSGAIDM 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLAB (Protein recA OS=Chlamydophila abortus GN=recA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.311e-28
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+AA+  I   FG  S+  LG    +  + T  +G L+LDLALG GG+PKGRIVEIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DPSY+  +
Sbjct:    5 DRKKALEAAIAYIEKQFGSGSIMSLGKHSASHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLI 108

HSP 2 Score: 33.113 bits (74), Expect = 3.311e-28
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANIHDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BURM1 (Protein recA OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=recA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.311e-28
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK S+ R+G    A  ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG A  +DAEHA D  Y+  L
Sbjct:    4 EKSKALAAALAQIEKQFGKGSIMRMGDGEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKL 107

HSP 2 Score: 38.891 bits (89), Expect = 3.311e-28
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V +L++   D GE ALEI D + RSG+ID+
Sbjct:  108 GVNVPDLLISQPDTGEQALEITDALVRSGSIDM 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEAE (Protein recA OS=Pseudomonas aeruginosa GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.312e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 3.312e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEAB (Protein recA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.312e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 3.312e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_CHLT2	2.543e-28	59.41	Protein recA OS=Chlamydia trachomatis (strain L2/4...	[more]
RECA_COLP3	2.544e-28	54.37	Protein recA OS=Colwellia psychrerythraea (strain ...	[more]
RECA_WOLWR	3.310e-28	53.70	Protein recA OS=Wolbachia sp. subsp. Drosophila si...	[more]
RECA_WOLPM	3.310e-28	53.70	Protein recA OS=Wolbachia pipientis wMel GN=recA P...	[more]
RECA_CHLMU	3.310e-28	58.42	Protein recA OS=Chlamydia muridarum GN=recA PE=3 S...	[more]
RECA_PSYCK	3.311e-28	53.85	Protein recA OS=Psychrobacter cryohalolentis (stra...	[more]
RECA_CHLAB	3.311e-28	56.73	Protein recA OS=Chlamydophila abortus GN=recA PE=3...	[more]
RECA_BURM1	3.311e-28	53.85	Protein recA OS=Burkholderia multivorans (strain A...	[more]
RECA_PSEAE	3.312e-28	55.34	Protein recA OS=Pseudomonas aeruginosa GN=recA PE=...	[more]
RECA_PSEAB	3.312e-28	55.34	Protein recA OS=Pseudomonas aeruginosa (strain UCB...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC