DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BRUA1 (Protein recA OS=Brucella abortus (strain S19) GN=recA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.766e-34
Identity = 64/105 (60.95%), Postives = 79/105 (75.24%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +ALDAA++ I  +FGK S+ RLG     + +ET  +G L+LD+ALG GGLPKGRIVEI+GPESSGKTTLALH IAE QK GG    VDAEHA DP Y++ L
Sbjct:   14 VDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 44.669 bits (104), Expect = 2.766e-34
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEI D + RSGAID+
Sbjct:  119 GVDLENLLISQPDTGEQALEITDTLVRSGAIDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHOCS (Protein recA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=recA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.767e-34
Identity = 64/105 (60.95%), Postives = 79/105 (75.24%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGG-ALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+Q+ALDAA+  I  +FGK S+ +LG+    A  E   +G L LD+ALG GGLP+GRIVEI+GPESSGKTTLALHAIAE QK GG    VDAEHA DP+Y++ L
Sbjct:   13 MDKQKALDAALGQIERAFGKGSIMKLGAREAMAETEAISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTCAFVDAEHALDPAYARKL 117

HSP 2 Score: 43.1282 bits (100), Expect = 2.767e-34
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDV+ L++   D GE ALEIAD + RSGAID+
Sbjct:  118 GVDVDELLISQPDAGEQALEIADTLVRSGAIDV 150

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_THETN (Protein recA OS=Thermoanaerobacter tengcongensis GN=recA PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.769e-34
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++Q+AL+ A++ I   FGK ++ RLG      VE  P+G L LD+ALG GG+P+GRI+EIFGPESSGKTTLALH IAE QK+GG    +DAEHA DP Y+K L
Sbjct:    3 IEKQKALEMAISQIERQFGKGAIMRLGDTAKLNVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNL 106

HSP 2 Score: 42.743 bits (99), Expect = 2.769e-34
Identity = 18/36 (50.00%), Postives = 28/36 (77.78%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV++++L+V   D GE ALEIA+ + RSGA+D+
Sbjct:  104 KNLGVNIDDLLVAQPDTGEQALEIAEALVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BIFBR (Protein recA OS=Bifidobacterium breve GN=recA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.599e-34
Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R+ ALD A+  +  SFGK S  RLG      VE  P+G L LD+ALG GGLPKGRIVEI+GPESSGKTTLALH +A  QK GG A  +DAEHA DP+Y++ L
Sbjct:   23 RKAALDTALAQVEKSFGKGSAMRLGDQPVQNVEVIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKL 124

HSP 2 Score: 45.4394 bits (106), Expect = 3.599e-34
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD ++LIV   DNGE ALEIAD + RSGA+D+
Sbjct:  125 GVDTDSLIVSQPDNGEQALEIADMLIRSGALDV 157

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLAM3 (Protein recA OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=recA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.693e-34
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+++L+ A+  I+  FGK SV RLGS   A V   P+G + LD+ALG GGLP+GRIVEI+GPESSGKTTL LHAIA  Q+ GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSVALDVALGIGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKL 108

HSP 2 Score: 44.2838 bits (103), Expect = 4.693e-34
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++ L+V   D GE ALEIAD + RSG+IDL
Sbjct:  106 KKLGVDIDALLVSQPDTGEQALEIADMLVRSGSIDL 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLOPS (Protein recA OS=Clostridium perfringens (strain SM101 / Type A) GN=recA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.695e-34
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +A++ AM  I   FGK SV +LG  G   ++   +GCL LD+ALG GG+PKGRI+EI+GPESSGKTT+ALH +AE QKLGG A  +DAEHA DP Y+K L
Sbjct:    7 DKLKAIEMAMGQIEKQFGKGSVMKLGEQGAPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRL 109

HSP 2 Score: 41.2022 bits (95), Expect = 4.695e-34
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV++++L+V   D GE ALEI + + RSGAID+
Sbjct:  107 KRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDV 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLOPE (Protein recA OS=Clostridium perfringens GN=recA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.695e-34
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +A++ AM  I   FGK SV +LG  G   ++   +GCL LD+ALG GG+PKGRI+EI+GPESSGKTT+ALH +AE QKLGG A  +DAEHA DP Y+K L
Sbjct:    7 DKLKAIEMAMGQIEKQFGKGSVMKLGEQGAPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRL 109

HSP 2 Score: 41.2022 bits (95), Expect = 4.695e-34
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV++++L+V   D GE ALEI + + RSGAID+
Sbjct:  107 KRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDV 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLOP1 (Protein recA OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=recA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.695e-34
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +A++ AM  I   FGK SV +LG  G   ++   +GCL LD+ALG GG+PKGRI+EI+GPESSGKTT+ALH +AE QKLGG A  +DAEHA DP Y+K L
Sbjct:    7 DKLKAIEMAMGQIEKQFGKGSVMKLGEQGAPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRL 109

HSP 2 Score: 41.2022 bits (95), Expect = 4.695e-34
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV++++L+V   D GE ALEI + + RSGAID+
Sbjct:  107 KRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDV 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCA9 (Protein recA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.696e-34
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I+ SFGK SV RLG      +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q+ GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALELALAQIDKSFGKGSVMRLGDEVRQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKL 108

HSP 2 Score: 45.4394 bits (106), Expect = 4.696e-34
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGAIDL
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAIDL 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ACIC1 (Protein recA OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=recA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.696e-34
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I  + GK S+ RLG    A ++  P+G + LD+ALG GGLP+GRIVEI+GPESSGKTTLALHA+A  Q+ GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALEHAIAQIERAHGKGSLMRLGDEARAPIDVIPTGSIALDVALGIGGLPRGRIVEIYGPESSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKL 108

HSP 2 Score: 46.2098 bits (108), Expect = 4.696e-34
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD +NL+V   D GE ALEIAD + RSGAID+
Sbjct:  106 KKLGVDTDNLLVSQPDTGEQALEIADTLIRSGAIDV 141

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_BRUA1	2.766e-34	60.95	Protein recA OS=Brucella abortus (strain S19) GN=r...	[more]
RECA_RHOCS	2.767e-34	60.95	Protein recA OS=Rhodospirillum centenum (strain AT...	[more]
RECA_THETN	2.769e-34	57.69	Protein recA OS=Thermoanaerobacter tengcongensis G...	[more]
RECA_BIFBR	3.599e-34	60.78	Protein recA OS=Bifidobacterium breve GN=recA PE=3...	[more]
RECA_CLAM3	4.693e-34	60.19	Protein recA OS=Clavibacter michiganensis subsp. m...	[more]
RECA_CLOPS	4.695e-34	58.25	Protein recA OS=Clostridium perfringens (strain SM...	[more]
RECA_CLOPE	4.695e-34	58.25	Protein recA OS=Clostridium perfringens GN=recA PE...	[more]
RECA_CLOP1	4.695e-34	58.25	Protein recA OS=Clostridium perfringens (strain AT...	[more]
RECA_MYCA9	4.696e-34	56.31	Protein recA OS=Mycobacterium abscessus (strain AT...	[more]
RECA_ACIC1	4.696e-34	57.28	Protein recA OS=Acidothermus cellulolyticus (strai...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC