DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRRM (Protein recA OS=Streptomyces rimosus GN=recA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.289e-33
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALDAA+  I   FGK +V R+G      +E  P+    LD+ALG GG+P+GR+VEI+GPESSGKTTL LHA+A  QK GG+   +DAEHA DP Y+K L
Sbjct:    5 DREKALDAALAQIERQFGKGAVMRMGERSKEPIEVIPTASTALDVALGVGGIPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 107

HSP 2 Score: 43.8986 bits (102), Expect = 2.289e-33
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD + LI+   DNGE ALEI D + RSGA+DL
Sbjct:  105 KKLGVDTDALILSQPDNGEQALEIVDMLVRSGALDL 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCS2 (Protein recA OS=Mycobacterium smegmatis GN=recA PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.292e-33
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ AM  I+ +FGK SV RLG      +   P+G ++LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    7 DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKL 109

HSP 2 Score: 43.8986 bits (102), Expect = 2.292e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  107 KKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_THICR (Protein recA OS=Thiomicrospira crunogena (strain XCL-2) GN=recA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.292e-33
Identity = 59/104 (56.73%), Postives = 79/104 (75.96%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL+AA+  I   FGK S+ R+G  G    +++  +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL LHAIAE+QK+GG A  VDAEHA DP Y++ L
Sbjct:    4 NKKKALEAALGQIEKQFGKGSIMRMGDKGAIRDIDSVSTGSLGLDVALGIGGLPRGRVVEIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPIYAEKL 107

HSP 2 Score: 45.0542 bits (105), Expect = 2.292e-33
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GVD++NL+V   D GE ALEI D + RSGA+D+ +
Sbjct:  108 GVDIDNLLVSQPDTGEQALEITDSLVRSGAVDIVI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MESSB (Protein recA OS=Mesorhizobium sp. (strain BNC1) GN=recA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.983e-33
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +ALDAA++ I  +FGK S+ RLG+    + +ET  +G L LD+ALG GGLP+GRI+EI+GPESSGKTTLALH +AE QK GG    +DAEHA DP Y++ L
Sbjct:   14 VDKSKALDAALSQIERAFGKGSIMRLGANDKVVEIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICGFIDAEHALDPVYARKL 118

HSP 2 Score: 44.2838 bits (103), Expect = 2.983e-33
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEI D + RSGA+D+
Sbjct:  119 GVDLENLLISQPDTGEQALEICDTLVRSGAVDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ROSCS (Protein recA OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=recA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.985e-33
Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSK 652
            ++++AL AAM+ I+  +GK S+ R+G A   L +E  P+G + LD+ALG GG+P+GR+VEI+GPESSGKTTLA H IAE QK+GG A  +DAEHAFDP Y+K
Sbjct:    6 EKEKALAAAMSQIDRKYGKGSIMRMGEASSKLAIEVIPTGSIALDIALGVGGVPRGRVVEIYGPESSGKTTLAQHIIAEAQKMGGVAAFIDAEHAFDPVYAK 107

HSP 2 Score: 41.5874 bits (96), Expect = 2.985e-33
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVDV+NL+V   D GE ALEI + + RS A+D+
Sbjct:  107 KRCGVDVDNLLVSQPDYGEQALEICETLVRSNAVDV 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SALAI (Protein recA OS=Salinispora arenicola (strain CNS-205) GN=recA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.985e-33
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+RALD A+  I+  FGK SV RLG          P+G + LD+ALG GGLP+GR++E++GPESSGKTT+ALHA+A  Q+ GG A  VDAEHA DP Y++AL
Sbjct:    6 DRERALDLALAQIDKQFGKGSVMRLGERPVVQTAVVPTGSIALDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEYARAL 108

HSP 2 Score: 41.9726 bits (97), Expect = 2.985e-33
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GVD + L+V   D GE ALEIAD + RSGA+D+ +
Sbjct:  109 GVDTDALLVSQPDTGEQALEIADMLVRSGALDIII 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCPA (Protein recA OS=Mycobacterium paratuberculosis GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.985e-33
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ AM  I  S+GK SV RLG      +   P+G + LD+ALG GGLP+GR+VEI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALELAMAQIEKSYGKGSVMRLGDEMRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKL 108

HSP 2 Score: 43.8986 bits (102), Expect = 2.985e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCA1 (Protein recA OS=Mycobacterium avium (strain 104) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.985e-33
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ AM  I  S+GK SV RLG      +   P+G + LD+ALG GGLP+GR+VEI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALELAMAQIEKSYGKGSVMRLGDEMRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKL 108

HSP 2 Score: 43.8986 bits (102), Expect = 2.985e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ACEPO (Protein recA OS=Acetobacter polyoxogenes GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.985e-33
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +AL+ A++ I  +FGK S+ R+G      V+   +G L LD+ALG GGLP+GRI+EI+GPESSGKTT+ALHAIAE Q+ GG    +DAEHA DP Y++ L
Sbjct:    7 IDKSKALEGALSQIERAFGKGSIMRMGERPTEQVDVISTGSLGLDIALGIGGLPRGRIIEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKL 110

HSP 2 Score: 45.0542 bits (105), Expect = 2.985e-33
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDV+NL++   D GE ALEIAD + RSGA+D+
Sbjct:  111 GVDVDNLLISQPDAGEQALEIADTLVRSGAVDV 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ENTFC (Protein recA OS=Enterococcus faecium GN=recA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.888e-33
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ ALDAA+  I  S+GK S+ +LG      + T PSG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++ L
Sbjct:    4 DRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKL 106

HSP 2 Score: 36.965 bits (84), Expect = 3.888e-33
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE  LEIAD +  SGA+D+
Sbjct:  107 GVNIDELLLSQPDTGEQGLEIADALVSSGAVDI 139

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_STRRM	2.289e-33	55.34	Protein recA OS=Streptomyces rimosus GN=recA PE=3 ...	[more]
RECA_MYCS2	2.292e-33	56.31	Protein recA OS=Mycobacterium smegmatis GN=recA PE...	[more]
RECA_THICR	2.292e-33	56.73	Protein recA OS=Thiomicrospira crunogena (strain X...	[more]
RECA_MESSB	2.983e-33	57.14	Protein recA OS=Mesorhizobium sp. (strain BNC1) GN...	[more]
RECA_ROSCS	2.985e-33	57.84	Protein recA OS=Roseiflexus castenholzii (strain D...	[more]
RECA_SALAI	2.985e-33	57.28	Protein recA OS=Salinispora arenicola (strain CNS-...	[more]
RECA_MYCPA	2.985e-33	57.28	Protein recA OS=Mycobacterium paratuberculosis GN=...	[more]
RECA_MYCA1	2.985e-33	57.28	Protein recA OS=Mycobacterium avium (strain 104) G...	[more]
RECA_ACEPO	2.985e-33	53.85	Protein recA OS=Acetobacter polyoxogenes GN=recA P...	[more]
RECA_ENTFC	3.888e-33	60.19	Protein recA OS=Enterococcus faecium GN=recA PE=3 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC