DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAS1 (Protein recA OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG      V +  SG +TLD ALG GG PKGRIVEI+GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNKARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACHD (Protein recA OS=Bacillus halodurans GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ ALD A+  I   FGK S+ +LG      V T  SG L LD+ALG GG P+GR++E++GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y+K L
Sbjct:    3 DRKAALDMALRQIEKQFGKGSIMKLGEQAEQRVSTISSGALALDIALGVGGYPRGRVIEVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYAKKL 105

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+++ L++   D GE ALEIA+ + RSGAID+
Sbjct:  103 KKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDV 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLOTE (Protein recA OS=Clostridium tetani GN=recA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.888e-33
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +A++AAM +I   FGK SV +LG      +E   +GCL +D+ALG GG+PKGRIVEI+GPESSGKTT+ALH IAE QK GG A  +DAEHA DPSY++ L
Sbjct:    4 EKLKAIEAAMGNIEKQFGKGSVMKLGEKNILDIEAISTGCLGMDIALGIGGVPKGRIVEIYGPESSGKTTVALHIIAEAQKNGGVAAFIDAEHALDPSYARKL 106

HSP 2 Score: 41.9726 bits (97), Expect = 3.888e-33
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NLIV   D GE  LEIA+ + RS AID+
Sbjct:  107 GVDIDNLIVSQPDTGEQGLEIAEALVRSNAIDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AMYMD (Protein recA OS=Amycolatopsis mediterranei GN=recA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.888e-33
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL+ A+  I+  +GK SV RLG  G A +   P+G + LD+ALG GGLP+GR++E++GPESSGKTT+ALHA+A  Q+ GG A  +DAEHA DP Y+K L
Sbjct:    6 DKDKALELALAQIDKQYGKGSVMRLGEEGRAPIAVIPTGAIALDVALGIGGLPRGRVIEVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAKKL 108

HSP 2 Score: 42.743 bits (99), Expect = 3.888e-33
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD + L+V   D GE ALEIAD + RSGA+D+
Sbjct:  106 KKLGVDTDALLVSQPDTGEQALEIADMLVRSGALDI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACP2 (Protein recA OS=Bacillus pumilus (strain SAFR-032) GN=recA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.888e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T PSG L LD ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y++ L
Sbjct:    3 DRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKL 105

HSP 2 Score: 39.2762 bits (90), Expect = 3.888e-33
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAW (Protein recA OS=Staphylococcus aureus (strain MW2) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAU (Protein recA OS=Staphylococcus aureus GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAT (Protein recA OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAS (Protein recA OS=Staphylococcus aureus (strain MSSA476) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAR (Protein recA OS=Staphylococcus aureus (strain MRSA252) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_STAS1	3.888e-33	62.14	Protein recA OS=Staphylococcus saprophyticus subsp...	[more]
RECA_BACHD	3.888e-33	58.25	Protein recA OS=Bacillus halodurans GN=recA PE=3 S...	[more]
RECA_CLOTE	3.888e-33	58.25	Protein recA OS=Clostridium tetani GN=recA PE=3 SV...	[more]
RECA_AMYMD	3.888e-33	54.37	Protein recA OS=Amycolatopsis mediterranei GN=recA...	[more]
RECA_BACP2	3.888e-33	59.22	Protein recA OS=Bacillus pumilus (strain SAFR-032)...	[more]
RECA_STAAW	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain MW2)...	[more]
RECA_STAAU	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus GN=recA PE=3...	[more]
RECA_STAAT	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain USA3...	[more]
RECA_STAAS	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain MSSA...	[more]
RECA_STAAR	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain MRSA...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC