DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAN (Protein recA OS=Staphylococcus aureus (strain N315) GN=recA PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAM (Protein recA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=recA PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAE (Protein recA OS=Staphylococcus aureus (strain Newman) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAC (Protein recA OS=Staphylococcus aureus (strain COL) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAAB (Protein recA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAA9 (Protein recA OS=Staphylococcus aureus (strain JH9) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAA2 (Protein recA OS=Staphylococcus aureus (strain JH1) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAA1 (Protein recA OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.888e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD  + ++  SFGK +V +LG   G  V T  +G +TLD ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQ  GG A  +DAEHA DP Y++AL
Sbjct:    4 DRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.888e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICPR (Protein recA OS=Rickettsia prowazekii GN=recA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.889e-33
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D++RA+ AA+  I  S+GK SV +LG      +E   +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    4 IDKERAIAAALAQIEKSYGKGSVMKLGQRPNVDIEAISTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAESQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 42.743 bits (99), Expect = 3.889e-33
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RSG ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMII 142

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCTU (Protein recA OS=Mycobacterium tuberculosis GN=recA PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.007e-33
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I  S+GK SV RLG      +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL 108

HSP 2 Score: 43.8986 bits (102), Expect = 5.007e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_STAAN	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain N315...	[more]
RECA_STAAM	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain Mu50...	[more]
RECA_STAAE	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain Newm...	[more]
RECA_STAAC	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain COL)...	[more]
RECA_STAAB	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain bovi...	[more]
RECA_STAA9	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain JH9)...	[more]
RECA_STAA2	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain JH1)...	[more]
RECA_STAA1	3.888e-33	61.17	Protein recA OS=Staphylococcus aureus (strain Mu3 ...	[more]
RECA_RICPR	3.889e-33	57.69	Protein recA OS=Rickettsia prowazekii GN=recA PE=3...	[more]
RECA_MYCTU	5.007e-33	55.34	Protein recA OS=Mycobacterium tuberculosis GN=recA...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC