DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCBO (Protein recA OS=Mycobacterium bovis GN=recA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.007e-33
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I  S+GK SV RLG      +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL 108

HSP 2 Score: 43.8986 bits (102), Expect = 5.007e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CORGL (Protein recA OS=Corynebacterium glutamicum GN=recA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.057e-33
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALDAA+  I   FGK +V RLG      ++T  SG   +D+ALG GG P+GRIVE++GPESSGKTT+ALHAIA+ QK GG A  +DAEHA DP Y++ L
Sbjct:   17 DRQKALDAALALIEKDFGKGAVMRLGDENRPPIQTISSGNTAIDIALGIGGFPRGRIVEVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKL 119

HSP 2 Score: 42.3578 bits (98), Expect = 5.057e-33
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGAID+
Sbjct:  120 GVDTDALLVSQPDTGEQALEIADMLVRSGAIDI 152

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CORGB (Protein recA OS=Corynebacterium glutamicum (strain R) GN=recA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.057e-33
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALDAA+  I   FGK +V RLG      ++T  SG   +D+ALG GG P+GRIVE++GPESSGKTT+ALHAIA+ QK GG A  +DAEHA DP Y++ L
Sbjct:   17 DRQKALDAALALIEKDFGKGAVMRLGDENRPPIQTISSGNTAIDIALGIGGFPRGRIVEVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKL 119

HSP 2 Score: 42.3578 bits (98), Expect = 5.057e-33
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGAID+
Sbjct:  120 GVDTDALLVSQPDTGEQALEIADMLVRSGAIDI 152

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACLI (Protein recA OS=Bacillus licheniformis GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.063e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T PSG L LD ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y++ L
Sbjct:    3 DRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKL 105

HSP 2 Score: 39.2762 bits (90), Expect = 5.063e-33
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACLD (Protein recA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=recA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.063e-33
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ +LG      + T PSG L LD ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y++ L
Sbjct:    3 DRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKL 105

HSP 2 Score: 39.2762 bits (90), Expect = 5.063e-33
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYMTH (Protein recA OS=Symbiobacterium thermophilum GN=recA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.063e-33
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +Q+A+D A+  I   FGK S+ RLG     L VE  P+G + LD+ALG GGLP+GRI EI+GPESSGKTT+ALH IAE QK+GG A  VDAEHA DP Y++AL
Sbjct:    7 KQKAIDMALAQIEKQFGKGSIMRLGEQMSRLNVEVIPTGSVALDVALGVGGLPRGRITEIYGPESSGKTTVALHVIAEAQKMGGVAAFVDAEHALDPVYAQAL 109

HSP 2 Score: 42.743 bits (99), Expect = 5.063e-33
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL+V   D GE ALEI + + RSGA+D+
Sbjct:  110 GVDIDNLLVSQPDTGEQALEITETLVRSGAVDV 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHIME (Protein recA OS=Rhizobium meliloti GN=recA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.063e-33
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +AL+AA++ I  SFGK S+ +LG+    + +ET  +G L LD+ALG GGLPKGRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:    1 MDKSKALEAALSQIERSFGKGSIMKLGAKDSVVEIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKL 105

HSP 2 Score: 45.0542 bits (105), Expect = 5.063e-33
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEI D + RSGAID+
Sbjct:  106 GVDLENLLISQPDTGEQALEITDTLVRSGAIDI 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCMM (Protein recA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=recA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.064e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ AM  I  S+GK SV RLG      +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALELAMAQIEKSYGKGSVMRLGDEVRQPISIIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKL 108

HSP 2 Score: 43.8986 bits (102), Expect = 5.064e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICBR (Protein recA OS=Rickettsia bellii (strain RML369-C) GN=recA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.064e-33
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+++A+ AA+  I  S+GK SV +LG      +E+  +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    4 IDKEKAVAAALAQIEKSYGKGSVMKLGQRPNVDIESVSTGSLGLDIALGIGGIPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 42.743 bits (99), Expect = 5.064e-33
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RSG ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMII 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NITWN (Protein recA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.591e-33
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +AL AA++ I   FGK SV +LG    ++ VE   SG L LD+ALG GGLPKGRIVE++GPESSGKTTLALHA+AE QK GG    +DAEHA DP Y++ L
Sbjct:   14 MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMDVEVISSGSLGLDIALGVGGLPKGRIVEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKL 118

HSP 2 Score: 42.743 bits (99), Expect = 6.591e-33
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L++   D+GE ALEIAD + RSGA+D+ +
Sbjct:  119 GVNVDDLLISQPDHGEQALEIADTLVRSGAVDVLI 153

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_MYCBO	5.007e-33	55.34	Protein recA OS=Mycobacterium bovis GN=recA PE=3 S...	[more]
RECA_CORGL	5.057e-33	58.25	Protein recA OS=Corynebacterium glutamicum GN=recA...	[more]
RECA_CORGB	5.057e-33	58.25	Protein recA OS=Corynebacterium glutamicum (strain...	[more]
RECA_BACLI	5.063e-33	59.22	Protein recA OS=Bacillus licheniformis GN=recA PE=...	[more]
RECA_BACLD	5.063e-33	59.22	Protein recA OS=Bacillus licheniformis (strain DSM...	[more]
RECA_SYMTH	5.063e-33	60.19	Protein recA OS=Symbiobacterium thermophilum GN=re...	[more]
RECA_RHIME	5.063e-33	58.10	Protein recA OS=Rhizobium meliloti GN=recA PE=3 SV...	[more]
RECA_MYCMM	5.064e-33	56.31	Protein recA OS=Mycobacterium marinum (strain ATCC...	[more]
RECA_RICBR	5.064e-33	56.73	Protein recA OS=Rickettsia bellii (strain RML369-C...	[more]
RECA_NITWN	6.591e-33	59.05	Protein recA OS=Nitrobacter winogradskyi (strain N...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC