DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHIET (Protein recA OS=Rhizobium etli GN=recA PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 6.591e-33
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + +ET  +G L LD+ALG GGLPKGRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIEIETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 43.1282 bits (100), Expect = 6.591e-33
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D + RSGA+D+
Sbjct:  119 GVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHIE6 (Protein recA OS=Rhizobium etli (strain CIAT 652) GN=recA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.591e-33
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + +ET  +G L LD+ALG GGLPKGRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIEIETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 43.1282 bits (100), Expect = 6.591e-33
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D + RSGA+D+
Sbjct:  119 GVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STACT (Protein recA OS=Staphylococcus carnosus (strain TM300) GN=recA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.592e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ+ALD  + ++  SFGK +V +LG      V +  SG +TLD ALG GG PKGRIVEI+GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++AL
Sbjct:    4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSISSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIAEVQKQGGVAAFIDAEHALDPVYAEAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 6.592e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SALTO (Protein recA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.594e-33
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+RALD A+  I+  FGK SV RLG          P+G + LD+ALG GGLP+GR++E++GPESSGKTT+ALHA+A  Q+ GG A  VDAEHA DP Y++AL
Sbjct:    6 DRERALDLALAQIDKQFGKGSVMRLGERPVVETAVVPTGSIALDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRSGGIAAFVDAEHALDPEYARAL 108

HSP 2 Score: 41.5874 bits (96), Expect = 6.594e-33
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGA+D+
Sbjct:  109 GVDTDALLVSQPDTGEQALEIADMLVRSGALDI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ENTHR (Protein recA OS=Enterococcus hirae GN=recA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.595e-33
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ ALDAA+  I  ++GK S+ +LG      V T PSG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++ L
Sbjct:    4 DRKAALDAALKKIEKNYGKGSIMKLGEKIDQQVSTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKL 106

HSP 2 Score: 36.965 bits (84), Expect = 6.595e-33
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE  LEIAD +  SGA+D+
Sbjct:  107 GVNIDELLLSQPDTGEQGLEIADALVSSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCSS (Protein recA OS=Mycobacterium sp. (strain MCS) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.595e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I  S GK SV RLG    A +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    7 DREKALELALAQIEKSHGKGSVMRLGDEVRAPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKL 109

HSP 2 Score: 43.8986 bits (102), Expect = 6.595e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  107 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCSK (Protein recA OS=Mycobacterium sp. (strain KMS) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.595e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I  S GK SV RLG    A +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    7 DREKALELALAQIEKSHGKGSVMRLGDEVRAPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKL 109

HSP 2 Score: 43.8986 bits (102), Expect = 6.595e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  107 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCSJ (Protein recA OS=Mycobacterium sp. (strain JLS) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.595e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I  S GK SV RLG    A +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    7 DREKALELALAQIEKSHGKGSVMRLGDEVRAPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKL 109

HSP 2 Score: 43.8986 bits (102), Expect = 6.595e-33
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  107 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACCN (Protein recA OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=recA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.596e-33
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ ALD A+  I   FGK S+ ++G      V T PSG L+LD+ALG GG P+GRI+EI+GPESSGKTT++LHAIAEVQ+ GG A  +DAEHA DP Y++ L
Sbjct:    3 DRQAALDMALKQIEKQFGKGSIMKMGEQAERKVSTVPSGSLSLDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKL 105

HSP 2 Score: 38.1206 bits (87), Expect = 6.596e-33
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE  LEIA+ + RSGAID+
Sbjct:  106 GVNIDELLLSQPDTGEQGLEIAEALVRSGAIDI 138

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICM5 (Protein recA OS=Rickettsia massiliae (strain Mtu5) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.596e-33
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++RA+ AA+  I  S+GK SV +LG      +E   +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    5 DKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGIPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 42.743 bits (99), Expect = 6.596e-33
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RSG ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMII 142

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_RHIET	6.591e-33	56.88	Protein recA OS=Rhizobium etli GN=recA PE=3 SV=2	[more]
RECA_RHIE6	6.591e-33	56.88	Protein recA OS=Rhizobium etli (strain CIAT 652) G...	[more]
RECA_STACT	6.592e-33	61.17	Protein recA OS=Staphylococcus carnosus (strain TM...	[more]
RECA_SALTO	6.594e-33	57.28	Protein recA OS=Salinispora tropica (strain ATCC B...	[more]
RECA_ENTHR	6.595e-33	60.19	Protein recA OS=Enterococcus hirae GN=recA PE=3 SV...	[more]
RECA_MYCSS	6.595e-33	56.31	Protein recA OS=Mycobacterium sp. (strain MCS) GN=...	[more]
RECA_MYCSK	6.595e-33	56.31	Protein recA OS=Mycobacterium sp. (strain KMS) GN=...	[more]
RECA_MYCSJ	6.595e-33	56.31	Protein recA OS=Mycobacterium sp. (strain JLS) GN=...	[more]
RECA_BACCN	6.596e-33	59.22	Protein recA OS=Bacillus cereus subsp. cytotoxis (...	[more]
RECA_RICM5	6.596e-33	58.25	Protein recA OS=Rickettsia massiliae (strain Mtu5)...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC