DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICFE (Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.596e-33
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++RA+ AA+  I  S+GK SV +LG      +E   +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    5 DKERAIAAALAQIEKSYGKGSVMKLGQRPNIDIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 42.743 bits (99), Expect = 6.596e-33
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RSG ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMII 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICB8 (Protein recA OS=Rickettsia bellii (strain OSU 85-389) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.596e-33
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+++A+ AA+  I  S+GK SV +LG      +E+  +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    4 IDKEKAVAAALAQIEKSYGKGSVMKLGQRPNVDIESVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 42.743 bits (99), Expect = 6.596e-33
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RSG ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMII 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AGRT5 (Protein recA OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.582e-33
Identity = 63/109 (57.80%), Postives = 81/109 (74.31%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + VET  +G L+LD+ALG GGLPKGRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 41.2022 bits (95), Expect = 8.582e-33
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+++L++   D GE ALEI D + RSGA+D+
Sbjct:  119 GVDLQSLLISQPDTGEQALEITDTLVRSGAVDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AGRVS (Protein recA OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 8.583e-33
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LG+    + VET  +G L+LD+ALG GGLPKGRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKTVDKSKALEAALSQIERSFGKGSIMKLGANEKIVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKL 118

HSP 2 Score: 43.5134 bits (101), Expect = 8.583e-33
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D + RSGAID+
Sbjct:  119 GVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SINMW (Protein recA OS=Sinorhizobium medicae (strain WSM419) GN=recA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.583e-33
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  +FGK S+ +LG+    + +ET  +G L LD+ALG GGLPKGRIVEI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERAFGKGSIMKLGAKDSVVEIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKL 118

HSP 2 Score: 44.669 bits (104), Expect = 8.583e-33
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEI D + RSGAID+
Sbjct:  119 GVDLENLLISQPDTGEQALEITDTLVRSGAIDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ENTFA (Protein recA OS=Enterococcus faecalis GN=recA PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.588e-33
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ ALDAA+  I  +FGK S+ +LG      + T PSG L LD+ALG GG P+GRI+E++GPESSGKTT++LHAIAEVQ+ GG A  +DAEHA DP Y++ L
Sbjct:    4 DRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKL 106

HSP 2 Score: 37.3502 bits (85), Expect = 8.588e-33
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE  LEIAD +  SGAID+
Sbjct:  107 GVNIDELLLSQPDTGEQGLEIADALVSSGAIDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAES (Protein recA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=recA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.588e-33
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ+ALD  + ++  SFGK +V +LG   G  V +  SG +T+D ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++AL
Sbjct:    4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 8.588e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STAEQ (Protein recA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=recA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.588e-33
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ+ALD  + ++  SFGK +V +LG   G  V +  SG +T+D ALG GG PKGRI+EI+GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++AL
Sbjct:    4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQAL 106

HSP 2 Score: 40.4318 bits (93), Expect = 8.588e-33
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL +   D+GE  LEIA+   RSGA+D+
Sbjct:  107 GVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ENTMU (Protein recA OS=Enterococcus mundtii GN=recA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.589e-33
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ ALDAA+  I  ++GK S+ +LG      + T PSG L LD+ALG GG P+GRI+E++GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++ L
Sbjct:    4 DRKAALDAALKKIEKNYGKGSIMKLGEKIDQQISTIPSGSLALDVALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKL 106

HSP 2 Score: 36.965 bits (84), Expect = 8.589e-33
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE  LEIAD +  SGA+D+
Sbjct:  107 GVNIDELLLSQPDTGEQGLEIADALVSSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_FRASC (Protein recA OS=Frankia sp. (strain CcI3) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.589e-33
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            LDR++ALD A+  I+  FGK SV RLG      V+  P+G + LD+ALG GGLP+GRI+EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+  L
Sbjct:    4 LDREKALDNALAQIDKQFGKGSVMRLGDDTRPPVQAIPTGSIALDVALGIGGLPRGRIIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKL 107

HSP 2 Score: 42.3578 bits (98), Expect = 8.589e-33
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGA+D+
Sbjct:  108 GVDTDGLLVSQPDTGEQALEIADMLVRSGALDI 140

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_RICFE	6.596e-33	58.25	Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1	[more]
RECA_RICB8	6.596e-33	56.73	Protein recA OS=Rickettsia bellii (strain OSU 85-3...	[more]
RECA_AGRT5	8.582e-33	57.80	Protein recA OS=Agrobacterium tumefaciens (strain ...	[more]
RECA_AGRVS	8.583e-33	56.88	Protein recA OS=Agrobacterium vitis (strain S4 / A...	[more]
RECA_SINMW	8.583e-33	55.96	Protein recA OS=Sinorhizobium medicae (strain WSM4...	[more]
RECA_ENTFA	8.588e-33	58.25	Protein recA OS=Enterococcus faecalis GN=recA PE=3...	[more]
RECA_STAES	8.588e-33	60.19	Protein recA OS=Staphylococcus epidermidis (strain...	[more]
RECA_STAEQ	8.588e-33	60.19	Protein recA OS=Staphylococcus epidermidis (strain...	[more]
RECA_ENTMU	8.589e-33	59.22	Protein recA OS=Enterococcus mundtii GN=recA PE=3 ...	[more]
RECA_FRASC	8.589e-33	57.69	Protein recA OS=Frankia sp. (strain CcI3) GN=recA ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC