DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ACHLI (Protein recA OS=Acholeplasma laidlawii (strain PG-8A) GN=recA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.595e-33
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +Q+AL+ A+  I   FGK S+ +LG      +E  PSG + LD+ALG GG P+GRI+E++GPESSGKTTL LHA+A  QK GG    +DAEHA DP+Y+KAL
Sbjct:    6 KQQALELALKQIEKQFGKGSIMKLGDGADHSIEAIPSGSIALDIALGIGGYPRGRIIEVYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKAL 107

HSP 2 Score: 41.5874 bits (96), Expect = 8.595e-33
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++NL++   D GE AL+IA+ + +SG+ID+
Sbjct:  105 KALGVDIDNLVLSQPDTGEQALDIAEALIKSGSIDM 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCLE (Protein recA OS=Mycobacterium leprae GN=recA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.107e-32
Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ AM  I  ++GK SV RLG      +   P+G + LD+ALG GGLP+GRIVEI+GPESSGKTT+ALHA+A  Q +GG A  +DAEHA +P Y+K L
Sbjct:    6 DREKALELAMAQIEKNYGKGSVMRLGDEMCQPISVIPTGSIALDVALGIGGLPRGRIVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKL 108

HSP 2 Score: 43.8986 bits (102), Expect = 1.107e-32
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEIAD + RSGA+D+
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_TROWT (Protein recA OS=Tropheryma whipplei (strain Twist) GN=recA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.115e-32
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++R RAL+ A+ +I+  +GK +V R+  A  A ++  P+G + LD ALG GGLP+GRIVEI+GPESSGKTTL LHAIA VQ+ GG A  +DAEHA DP Y+K L
Sbjct:    7 INRTRALELALANIDRQYGKGAVMRMNDAQKAYIDVIPTGSIALDYALGVGGLPRGRIVEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKL 110

HSP 2 Score: 41.5874 bits (96), Expect = 1.115e-32
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++ L+V   D+GE ALEI+D + RS AIDL
Sbjct:  108 KKLGVDIDALLVSQPDSGEQALEISDMLIRSTAIDL 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_TROW8 (Protein recA OS=Tropheryma whipplei (strain TW08/27) GN=recA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.115e-32
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++R RAL+ A+ +I+  +GK +V R+  A  A ++  P+G + LD ALG GGLP+GRIVEI+GPESSGKTTL LHAIA VQ+ GG A  +DAEHA DP Y+K L
Sbjct:    7 INRTRALELALANIDRQYGKGAVMRMNDAQKAYIDVIPTGSIALDYALGVGGLPRGRIVEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKL 110

HSP 2 Score: 41.5874 bits (96), Expect = 1.115e-32
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++ L+V   D+GE ALEI+D + RS AIDL
Sbjct:  108 KKLGVDIDALLVSQPDSGEQALEISDMLIRSTAIDL 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_COREF (Protein recA OS=Corynebacterium efficiens GN=recA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.117e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALDAA+  I   FGK +V RLG      ++   SG   LD+ALG GG P+GRIVE++GPESSGKTT+ALHAIA+ QK GG A  +DAEHA DP Y++ L
Sbjct:   15 DRQKALDAALALIEKDFGKGAVMRLGDENRPPIQVISSGNTALDIALGIGGFPRGRIVEVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKL 117

HSP 2 Score: 42.3578 bits (98), Expect = 1.117e-32
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGAID+
Sbjct:  118 GVDTDALLVSQPDTGEQALEIADMLVRSGAIDI 150

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHIL3 (Protein recA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.118e-32
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + +ET  +G L LD+ALG GGLP+GRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 43.1282 bits (100), Expect = 1.118e-32
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D + RSGA+D+
Sbjct:  119 GVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHILW (Protein recA OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.118e-32
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + +ET  +G L LD+ALG GGLP+GRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 43.1282 bits (100), Expect = 1.118e-32
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D + RSGA+D+
Sbjct:  119 GVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHIEC (Protein recA OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.118e-32
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + +D+ +AL+AA++ I  SFGK S+ +LGS    + +ET  +G L LD+ALG GGLPKGRI+EI+GPESSGKTTLAL  IAE QK GG    VDAEHA DP Y++ L
Sbjct:   10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKL 118

HSP 2 Score: 43.1282 bits (100), Expect = 1.118e-32
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D + RSGA+D+
Sbjct:  119 GVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ENTGA (Protein recA OS=Enterococcus gallinarum GN=recA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.118e-32
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ ALDAA+  I  ++GK ++ +LG      + T PSG L LD+ALG GG P+GRIVE++GPESSGKTT+ALHAIAEVQK GG A  +DAEHA DP Y++ L
Sbjct:    4 DRKAALDAALKKIEKNYGKGAIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIAEVQKGGGTAAFIDAEHALDPQYAQKL 106

HSP 2 Score: 37.3502 bits (85), Expect = 1.118e-32
Identity = 15/33 (45.45%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++++L++   D GE  LEIAD +  SGA+D+
Sbjct:  107 GVNIDDLLLSQPDTGEQGLEIADALVSSGAVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICTY (Protein recA OS=Rickettsia typhi GN=recA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.119e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++RA+ AA+  I  S+GK SV +LG      +E   +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    5 DKERAIAAALAQIEKSYGKGSVMKLGQRPNIDIEAISTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 42.743 bits (99), Expect = 1.119e-32
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RSG ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMII 142

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_ACHLI	8.595e-33	54.90	Protein recA OS=Acholeplasma laidlawii (strain PG-...	[more]
RECA_MYCLE	1.107e-32	56.31	Protein recA OS=Mycobacterium leprae GN=recA PE=3 ...	[more]
RECA_TROWT	1.115e-32	56.73	Protein recA OS=Tropheryma whipplei (strain Twist)...	[more]
RECA_TROW8	1.115e-32	56.73	Protein recA OS=Tropheryma whipplei (strain TW08/2...	[more]
RECA_COREF	1.117e-32	58.25	Protein recA OS=Corynebacterium efficiens GN=recA ...	[more]
RECA_RHIL3	1.118e-32	55.96	Protein recA OS=Rhizobium leguminosarum bv. viciae...	[more]
RECA_RHILW	1.118e-32	55.96	Protein recA OS=Rhizobium leguminosarum bv. trifol...	[more]
RECA_RHIEC	1.118e-32	56.88	Protein recA OS=Rhizobium etli (strain CFN 42 / AT...	[more]
RECA_ENTGA	1.118e-32	59.22	Protein recA OS=Enterococcus gallinarum GN=recA PE...	[more]
RECA_RICTY	1.119e-32	58.25	Protein recA OS=Rickettsia typhi GN=recA PE=3 SV=1	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC