DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRM5 (Protein recA OS=Stenotrophomonas maltophilia (strain R551-3) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.457e-32
Identity = 63/103 (61.17%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK SV R+G      VE  P+G L LD+ALG GGLPKGR+VEI+GPESSGKTTL L AIAE QKLGG A  +DAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKL 106

HSP 2 Score: 40.4318 bits (93), Expect = 1.457e-32
Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L++   D GE ALEIAD + RSG++D+
Sbjct:  107 GVNVDDLLLSQPDTGEQALEIADMLVRSGSVDI 139
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCUA (Protein recA OS=Mycobacterium ulcerans (strain Agy99) GN=recA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.457e-32
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ AM  I  S+GK SV RLG      +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    6 DREKALELAMAQIEKSYGKGSVMRLGDEVRQPISIIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKL 108

HSP 2 Score: 42.3578 bits (98), Expect = 1.457e-32
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD ++L+V   D GE ALEI D + RSGA+D+
Sbjct:  106 KKLGVDTDSLLVSQPDTGEQALEIVDMLIRSGALDI 141
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ACHLA (Protein recA OS=Acholeplasma laidlawii GN=recA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.458e-32
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 2 
Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +Q+AL+ A+  I   FGK S+ +LG      +E  PSG + LD+ALG GG P+GRI+E++GPESSGKTTL LHA+A  QK GG    +DAEHA DP+Y+KAL
Sbjct:    6 KQQALELALKQIEKQFGKGSIMKLGDGADHSIEAIPSGSIALDIALGIGGYPRGRIIEVYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKAL 107

HSP 2 Score: 40.817 bits (94), Expect = 1.458e-32
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD++NL++   D GE AL+IA+ + +SG+ID+
Sbjct:  105 KALGVDLDNLVLSQPDTGEQALDIAEALIKSGSIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLOBB (Protein recA OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=recA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.896e-32
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++ +A++ AM  I   FGK SV +LG      ++   +GCL LD+ALG GG+PKGRIVEI+GPESSGKTT+ALH  AE QK GG    +DAEHA DPSY++ L
Sbjct:    6 INKLKAIENAMGQIEKQFGKGSVMKLGENSVLNIDAISTGCLDLDIALGIGGVPKGRIVEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNL 109

HSP 2 Score: 45.0542 bits (105), Expect = 1.896e-32
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            ++ GVD ENLIV   D GE  LEIA+ + RSGAID+ +
Sbjct:  107 RNLGVDTENLIVSQPDTGEQGLEIAEALVRSGAIDVII 144
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CLOBA (Protein recA OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=recA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.896e-32
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++ +A++ AM  I   FGK SV +LG      ++   +GCL LD+ALG GG+PKGRIVEI+GPESSGKTT+ALH  AE QK GG    +DAEHA DPSY++ L
Sbjct:    6 INKLKAIENAMGQIEKQFGKGSVMKLGEDSVLNIDAISTGCLDLDIALGIGGVPKGRIVEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNL 109

HSP 2 Score: 45.0542 bits (105), Expect = 1.896e-32
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            ++ GVD ENLIV   D GE  LEIA+ + RSGAID+ +
Sbjct:  107 RNLGVDTENLIVSQPDTGEQGLEIAEALVRSGAIDVII 144
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ARTS2 (Protein recA OS=Arthrobacter sp. (strain FB24) GN=recA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.897e-32
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALDAA+  I+  FGK SV RLG    A +E  P+G + LD+ALG GGLP+GR+VEI+GPESSGKTT+ALHA+A  Q+ GG A  +DAEHA DP Y+  L
Sbjct:    6 DRQKALDAALAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKL 108

HSP 2 Score: 35.4242 bits (80), Expect = 1.897e-32
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEI D +  SG++D+
Sbjct:  109 GVDTDALLVSQPDTGEQALEIMDMLIGSGSLDV 141
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BREBN (Protein recA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=recA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.897e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ AL++A+  I   FGK S+ +LG      + T  SG L LD+ALG GG P+GRIVEI+GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y+  L
Sbjct:    3 DRRAALESALRQIEKQFGKGSIMKLGEVSNIQISTASSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAEVQRQGGQAAFIDAEHALDPVYAAKL 105

HSP 2 Score: 39.2762 bits (90), Expect = 1.897e-32
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 138
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICCK (Protein recA OS=Rickettsia canadensis (strain McKiel) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.897e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++RA+ AA+  I  S+GK SV +LG      +E   +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    5 DKERAIAAALAQIEKSYGKGSVMKLGQRPNIDIEAVSTGSLGLDMALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 41.2022 bits (95), Expect = 1.897e-32
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEI D + RSG ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEITDTLIRSGGIDMVI 142
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRSV (Protein recA OS=Streptococcus sanguinis (strain SK36) GN=recA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.467e-32
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:  308 KVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            K++  S   GD    +RQ+ALD A+ +I   FGK ++ RLG      V+   SG L LD+ALG GG PKGRI+EI+GPESSGKTT+ALHA+A+ QK GG A  +DAEHA DPSY+ AL
Sbjct:    7 KLDEISKKFGD----ERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAAL 120

HSP 2 Score: 36.1946 bits (82), Expect = 2.467e-32
Identity = 15/33 (45.45%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D+GE  LEIA ++  SGA+DL
Sbjct:  121 GVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDL 153
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BACSK (Protein recA OS=Bacillus clausii (strain KSM-K16) GN=recA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.470e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++ALD A+  I   FGK S+ +LG      V T  SG L LD+ALG GG PKGR++E++GPESSGKTT+ALHAIAEVQ+ GG A  +DAEHA DP Y+  L
Sbjct:    3 DRKQALDMALRHIEKQFGKGSIMKLGEQAEQRVSTVSSGTLALDIALGVGGYPKGRVIEVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYASKL 105

HSP 2 Score: 38.891 bits (89), Expect = 2.470e-32
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIDELLLSQPDTGEQALEIAEALVRSGALDI 138
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_STRM51.457e-3261.17Protein recA OS=Stenotrophomonas maltophilia (stra... [more]
RECA_MYCUA1.457e-3256.31Protein recA OS=Mycobacterium ulcerans (strain Agy... [more]
RECA_ACHLA1.458e-3254.90Protein recA OS=Acholeplasma laidlawii GN=recA PE=... [more]
RECA_CLOBB1.896e-3254.81Protein recA OS=Clostridium botulinum (strain Eklu... [more]
RECA_CLOBA1.896e-3254.81Protein recA OS=Clostridium botulinum (strain Alas... [more]
RECA_ARTS21.897e-3260.19Protein recA OS=Arthrobacter sp. (strain FB24) GN=... [more]
RECA_BREBN1.897e-3258.25Protein recA OS=Brevibacillus brevis (strain 47 / ... [more]
RECA_RICCK1.897e-3258.25Protein recA OS=Rickettsia canadensis (strain McKi... [more]
RECA_STRSV2.467e-3255.08Protein recA OS=Streptococcus sanguinis (strain SK... [more]
RECA_BACSK2.470e-3258.25Protein recA OS=Bacillus clausii (strain KSM-K16) ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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