DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCGI (Protein recA OS=Mycobacterium gilvum (strain PYR-GCK) GN=recA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.470e-32
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+ A+  I+ +FGK SV RLG      +   P+G + LD+ALG GGLP+GR++EI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y+K L
Sbjct:    7 DREKALELALAQIDKNFGKGSVMRLGEDVRPPIAVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKL 109

HSP 2 Score: 42.743 bits (99), Expect = 2.470e-32
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVD + L+V   D GE ALEIAD + RSGA+D+
Sbjct:  107 KKLGVDTDALLVSQPDTGEQALEIADMLIRSGALDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRMK (Protein recA OS=Stenotrophomonas maltophilia (strain K279a) GN=recA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.471e-32
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK SV R+G      VE  P+G L LD+ALG GGLPKGR+VEI+GPESSGKTTL L AIAE QK+GG A  +DAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFIDAEHALDPIYAAKL 106

HSP 2 Score: 40.4318 bits (93), Expect = 2.471e-32
Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L++   D GE ALEIAD + RSG++D+
Sbjct:  107 GVNVDDLLLSQPDTGEQALEIADMLVRSGSVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AQUAE (Protein recA OS=Aquifex aeolicus GN=recA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.471e-32
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL+ A+++I   FGK +V  L S     VET P+G L LD+A G GG+PKGRI EIFG ESSGKTTLALH IAE QK GG A+ +DAEHA DP Y+K L
Sbjct:    7 EKKKALEVALSNIEKRFGKGAVMPLKSVEKVQVETIPTGSLALDIATGVGGIPKGRITEIFGVESSGKTTLALHVIAEAQKRGGVAVFIDAEHALDPKYAKKL 109

HSP 2 Score: 42.743 bits (99), Expect = 2.471e-32
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GVDVENL +   D GE ALEIA+ +  SGA+D+
Sbjct:  107 KKLGVDVENLYISQPDYGEQALEIAESLINSGAVDV 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ACIF5 (Protein recA OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=recA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.471e-32
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R +AL AA++ I+  FGK +V RLG       +E + +G L LDLALG GGLP+GR+VEI+GPESSGKTTL LHAIA  Q  GG A  +DAEHA DP Y+  L
Sbjct:    5 RSKALSAALSQIDKQFGKGAVMRLGDHNAIKDIEVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKL 107

HSP 2 Score: 46.9802 bits (110), Expect = 2.471e-32
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEIAD + RSGA+DL
Sbjct:  108 GVDLENLLISQPDTGEQALEIADMLVRSGAVDL 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ACIF2 (Protein recA OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=recA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.471e-32
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R +AL AA++ I+  FGK +V RLG       +E + +G L LDLALG GGLP+GR+VEI+GPESSGKTTL LHAIA  Q  GG A  +DAEHA DP Y+  L
Sbjct:    5 RSKALSAALSQIDKQFGKGAVMRLGDHNAIKDIEVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKL 107

HSP 2 Score: 46.9802 bits (110), Expect = 2.471e-32
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ENL++   D GE ALEIAD + RSGA+DL
Sbjct:  108 GVDLENLLISQPDTGEQALEIADMLVRSGAVDL 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_XANCP (Protein recA OS=Xanthomonas campestris pv. campestris GN=recA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.471e-32
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA++ I   FGK SV R+G      VE  P+G L LD+ALG GGLPKGR+VEI+GPESSGKTTL L AIAE QKLGG A  +DAEHA DP Y+  L
Sbjct:    4 NKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKL 106

HSP 2 Score: 38.1206 bits (87), Expect = 2.471e-32
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L++   D GE ALEIAD + RS ++D+
Sbjct:  107 GVNVDDLLLSQPDTGEQALEIADMLVRSSSVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_XANCB (Protein recA OS=Xanthomonas campestris pv. campestris (strain B100) GN=recA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.471e-32
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA++ I   FGK SV R+G      VE  P+G L LD+ALG GGLPKGR+VEI+GPESSGKTTL L AIAE QKLGG A  +DAEHA DP Y+  L
Sbjct:    4 NKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKL 106

HSP 2 Score: 38.1206 bits (87), Expect = 2.471e-32
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L++   D GE ALEIAD + RS ++D+
Sbjct:  107 GVNVDDLLLSQPDTGEQALEIADMLVRSSSVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_XANC8 (Protein recA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=recA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.471e-32
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA++ I   FGK SV R+G      VE  P+G L LD+ALG GGLPKGR+VEI+GPESSGKTTL L AIAE QKLGG A  +DAEHA DP Y+  L
Sbjct:    4 NKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKL 106

HSP 2 Score: 38.1206 bits (87), Expect = 2.471e-32
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L++   D GE ALEIAD + RS ++D+
Sbjct:  107 GVNVDDLLLSQPDTGEQALEIADMLVRSSSVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHOOB (Protein recA OS=Rhodococcus opacus (strain B4) GN=recA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.217e-32
Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR +ALD A+  I+ +FGK SV RLG      +   P+G ++LD+ALG GGLP+GR+VEI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y++ L
Sbjct:    7 DRDKALDLALAQIDKNFGKGSVMRLGEGVRQPIAVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKL 109

HSP 2 Score: 41.5874 bits (96), Expect = 3.217e-32
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGA+D+
Sbjct:  110 GVDTDALLVSQPDTGEQALEIADMLIRSGALDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_EXIS2 (Protein recA OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=recA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.218e-32
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR+ AL+ A+  I   FGK S+ +LG +    V    SG +TLD+ALG GG P+GR++E++GPESSGKTT++LHAIAEVQK GG A  +DAEHA DP+Y+  L
Sbjct:    3 DRKAALEMALRQIEKQFGKGSIMKLGESADQRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTVSLHAIAEVQKQGGQAAFIDAEHALDPAYASKL 105

HSP 2 Score: 39.2762 bits (90), Expect = 3.218e-32
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIA+ + RSGA+D+
Sbjct:  106 GVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 138

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_MYCGI	2.470e-32	55.34	Protein recA OS=Mycobacterium gilvum (strain PYR-G...	[more]
RECA_STRMK	2.471e-32	60.19	Protein recA OS=Stenotrophomonas maltophilia (stra...	[more]
RECA_AQUAE	2.471e-32	58.25	Protein recA OS=Aquifex aeolicus GN=recA PE=3 SV=1	[more]
RECA_ACIF5	2.471e-32	57.28	Protein recA OS=Acidithiobacillus ferrooxidans (st...	[more]
RECA_ACIF2	2.471e-32	57.28	Protein recA OS=Acidithiobacillus ferrooxidans (st...	[more]
RECA_XANCP	2.471e-32	61.17	Protein recA OS=Xanthomonas campestris pv. campest...	[more]
RECA_XANCB	2.471e-32	61.17	Protein recA OS=Xanthomonas campestris pv. campest...	[more]
RECA_XANC8	2.471e-32	61.17	Protein recA OS=Xanthomonas campestris pv. campest...	[more]
RECA_RHOOB	3.217e-32	56.31	Protein recA OS=Rhodococcus opacus (strain B4) GN=...	[more]
RECA_EXIS2	3.218e-32	55.34	Protein recA OS=Exiguobacterium sibiricum (strain ...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC