DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NOCFA (Protein recA OS=Nocardia farcinica GN=recA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.218e-32
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR +AL+ A+  +  SFGK +V RLG      +   P+G + LD+ALG GGLP+GRIVEI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y++ L
Sbjct:    7 DRDKALELALAQVEKSFGKGAVMRLGEEARQPISVIPTGSIALDVALGIGGLPRGRIVEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYARKL 109

HSP 2 Score: 42.3578 bits (98), Expect = 3.218e-32
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGAID+
Sbjct:  110 GVDTDALLVSQPDTGEQALEIADMLVRSGAIDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_XANCI (Protein recA OS=Xanthomonas campestris pv. citri GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.218e-32
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA++ I   FGK SV R+G      VE  P+G L LD+ALG GGLPKGR+VEI+GPESSGKTTL L AIAE QK GG A  +DAEHA DP Y+  L
Sbjct:    4 NKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.218e-32
Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L++   D GE ALEIAD + RSG++D+
Sbjct:  107 GVNVDDLLLSQPDTGEQALEIADMLVRSGSVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_XANAC (Protein recA OS=Xanthomonas axonopodis pv. citri GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.218e-32
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA++ I   FGK SV R+G      VE  P+G L LD+ALG GGLPKGR+VEI+GPESSGKTTL L AIAE QK GG A  +DAEHA DP Y+  L
Sbjct:    4 NKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKL 106

HSP 2 Score: 40.4318 bits (93), Expect = 3.218e-32
Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L++   D GE ALEIAD + RSG++D+
Sbjct:  107 GVNVDDLLLSQPDTGEQALEIADMLVRSGSVDI 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NITHX (Protein recA OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=recA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.187e-32
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +D+ +AL AA++ I   FGK SV +LG    ++ +E   SG L LD+ALG GGLPKGR+VEI+GPESSGKTTLALH +AE QK GG    +DAEHA DP Y++ L
Sbjct:   14 MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMDIEVISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKL 118

HSP 2 Score: 41.9726 bits (97), Expect = 4.187e-32
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV V++L++   D+GE ALEIAD + RSGA+D+ +
Sbjct:  119 GVKVDDLLISQPDHGEQALEIADTLVRSGAVDVLI 153

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHOSR (Protein recA OS=Rhodococcus sp. (strain RHA1) GN=recA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.190e-32
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR +ALD A+  I+ +FGK SV RLG      +   P+G + LD+ALG GGLP+GR+VEI+GPESSGKTT+ALHA+A  Q  GG A  +DAEHA DP Y++ L
Sbjct:    7 DRDKALDLALAQIDKNFGKGSVMRLGEGVRQPIAVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKL 109

HSP 2 Score: 41.5874 bits (96), Expect = 4.190e-32
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD + L+V   D GE ALEIAD + RSGA+D+
Sbjct:  110 GVDTDALLVSQPDTGEQALEIADMLIRSGALDI 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICCN (Protein recA OS=Rickettsia conorii GN=recA PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 4.191e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++RA+ AA+  I  S+GK SV +LG      +E   +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    5 DKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 40.4318 bits (93), Expect = 4.191e-32
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RS  ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMII 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RICAE (Protein recA OS=Rickettsia africae (strain ESF-5) GN=recA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.191e-32
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++RA+ AA+  I  S+GK SV +LG      +E   +G L LD+ALG GG+PKGRI+EIFGPESSGKTTL LH IAE QK GG    +DAEHA DP+Y+K L
Sbjct:    5 DKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKL 107

HSP 2 Score: 40.4318 bits (93), Expect = 4.191e-32
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV+++ LI+   D GE ALEIAD + RS  ID+ +
Sbjct:  105 KKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMII 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_STRGC (Protein recA OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=recA PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.448e-32
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ+ALD A+ +I   FGK ++ RLG      V+   SG L LD+ALG GG PKGRI+EI+GPESSGKTT+ALHA+A+ QK GG A  +DAEHA DPSY+ AL
Sbjct:   18 ERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAAL 120

HSP 2 Score: 36.1946 bits (82), Expect = 5.448e-32
Identity = 15/33 (45.45%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D+GE  LEIA ++  SGA+DL
Sbjct:  121 GVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDL 153

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LACJO (Protein recA OS=Lactobacillus johnsonii GN=recA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.453e-32
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+++ALD A+  I   FGK +V R+G      + T PSG L LD ALG GG P+GRI+E++GPESSGKTT+ALHA+AEVQK GG A  +DAE+A DP+Y++AL
Sbjct:    5 DKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEAL 107

HSP 2 Score: 36.5798 bits (83), Expect = 5.453e-32
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+++LI+   + GE  L+IAD +  SGAID+
Sbjct:  108 GVDIDSLILSQPNTGEEGLQIADTLIASGAIDI 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MAGSA (Protein recA OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=recA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.454e-32
Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D   +DRQ+AL+AA++ I  +FGK S+ +LG     +  E   +G L LD+ALG GG+P+GRI+E++GPESSGKTTLALH IAE QK GG    VDAEHA DPSY++ L
Sbjct:   10 DKDTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVETEVVSTGSLGLDVALGIGGVPRGRIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKL 118

HSP 2 Score: 39.6614 bits (91), Expect = 5.454e-32
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEIAD + RSGA+D+
Sbjct:  119 GVNLDELLISQPDAGEQALEIADTLVRSGAVDV 151

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_NOCFA	3.218e-32	55.34	Protein recA OS=Nocardia farcinica GN=recA PE=3 SV...	[more]
RECA_XANCI	3.218e-32	60.19	Protein recA OS=Xanthomonas campestris pv. citri G...	[more]
RECA_XANAC	3.218e-32	60.19	Protein recA OS=Xanthomonas axonopodis pv. citri G...	[more]
RECA_NITHX	4.187e-32	57.14	Protein recA OS=Nitrobacter hamburgensis (strain X...	[more]
RECA_RHOSR	4.190e-32	56.31	Protein recA OS=Rhodococcus sp. (strain RHA1) GN=r...	[more]
RECA_RICCN	4.191e-32	58.25	Protein recA OS=Rickettsia conorii GN=recA PE=3 SV...	[more]
RECA_RICAE	4.191e-32	58.25	Protein recA OS=Rickettsia africae (strain ESF-5) ...	[more]
RECA_STRGC	5.448e-32	59.22	Protein recA OS=Streptococcus gordonii (strain Cha...	[more]
RECA_LACJO	5.453e-32	57.28	Protein recA OS=Lactobacillus johnsonii GN=recA PE...	[more]
RECA_MAGSA	5.454e-32	55.96	Protein recA OS=Magnetospirillum magneticum (strai...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC