DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROMP (Protein recA OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=recA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.862e-37
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 2

Query:  329 DSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DS +S   ++ +AL+  +  I  +FG+ S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   10 DSKESSSEEKNKALNLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASL 119

HSP 2 Score: 46.595 bits (109), Expect = 2.862e-37
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  120 GVDVENLLVSQPDTGEMALEIVDQLIRSTAVDL 152

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NOSP7 (Protein recA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=recA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.730e-37
Identity = 66/101 (65.35%), Postives = 79/101 (78.22%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +Q+AL   +N I  SFGK ++ RLG A    VET  SG LTLDLALGGGLPKGR++EI+GPESSGKTT+ALHA+AEVQ+ GG A  VDAEHA DP+Y+ AL
Sbjct:   10 KQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVALHALAEVQRNGGIAAFVDAEHALDPTYAAAL 110

HSP 2 Score: 42.3578 bits (98), Expect = 3.730e-37
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD++NL++   D GE ALEI D++ RS A+D+
Sbjct:  111 GVDIDNLLISQPDTGESALEIVDQLVRSAAVDI 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROMT (Protein recA OS=Prochlorococcus marinus (strain NATL2A) GN=recA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.073e-36
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++  ++++AL   +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR++E++GPESSGKTTL LHAIAE+Q+ GG A  VDAEHA DP Y+ +L
Sbjct:   17 DAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASL 123

HSP 2 Score: 47.3654 bits (111), Expect = 1.073e-36
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  124 GVDVENLLVSQPDTGEMALEIVDQLIRSAAVDL 156

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROM1 (Protein recA OS=Prochlorococcus marinus (strain NATL1A) GN=recA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.073e-36
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = 2

Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D++  ++++AL   +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR++E++GPESSGKTTL LHAIAE+Q+ GG A  VDAEHA DP Y+ +L
Sbjct:   17 DAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASL 123

HSP 2 Score: 47.3654 bits (111), Expect = 1.073e-36
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  124 GVDVENLLVSQPDTGEMALEIVDQLIRSAAVDL 156

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROM4 (Protein recA OS=Prochlorococcus marinus (strain MIT 9211) GN=recA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.074e-36
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 2

Query:  308 KVNGFSSDSGDSRFL-----DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +VN   S + +SR       +R +AL+  +  I  +FGK S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQ+ GG A  VDAEHA DP Y+ +L
Sbjct:    4 EVNANQSPNAESRQEAARSGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASL 125

HSP 2 Score: 45.8246 bits (107), Expect = 1.074e-36
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A++L
Sbjct:  126 GVDVENLLVSQPDTGEMALEIVDQLIRSAAVEL 158

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAUCR (Protein recA OS=Caulobacter crescentus GN=recA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.399e-36
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+QRAL+AA+  I+ +FGK SV +LG  G   +E+  +G L LD+ALG GGLPKGRIVE++GPESSGKTTLALH +AEVQK GG A  VDAEHA DPSY+  L
Sbjct:   16 DKQRALEAALAQIDRAFGKGSVMKLGEKGKVEIESVSTGSLGLDIALGIGGLPKGRIVEVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAYKL 118

HSP 2 Score: 44.2838 bits (103), Expect = 1.399e-36
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++NL+V   DNGE ALEI D + RSGA+D+
Sbjct:  119 GVNLDNLLVSQPDNGEQALEITDTLVRSGAVDI 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAUCN (Protein recA OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=recA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.399e-36
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+QRAL+AA+  I+ +FGK SV +LG  G   +E+  +G L LD+ALG GGLPKGRIVE++GPESSGKTTLALH +AEVQK GG A  VDAEHA DPSY+  L
Sbjct:   16 DKQRALEAALAQIDRAFGKGSVMKLGEKGKVEIESVSTGSLGLDIALGIGGLPKGRIVEVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAYKL 118

HSP 2 Score: 44.2838 bits (103), Expect = 1.399e-36
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++NL+V   DNGE ALEI D + RSGA+D+
Sbjct:  119 GVNLDNLLVSQPDNGEQALEITDTLVRSGAVDI 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROMS (Protein recA OS=Prochlorococcus marinus (strain AS9601) GN=recA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.822e-36
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL   +  I  +FG+ S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   13 EKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASL 114

HSP 2 Score: 47.3654 bits (111), Expect = 1.822e-36
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  115 GVDVENLLVSQPDTGEMALEIVDQLIRSSAVDL 147

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROM9 (Protein recA OS=Prochlorococcus marinus (strain MIT 9312) GN=recA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.822e-36
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL   +  I  +FG+ S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   13 EKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASL 114

HSP 2 Score: 47.3654 bits (111), Expect = 1.822e-36
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  115 GVDVENLLVSQPDTGEMALEIVDQLIRSSAVDL 147

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PROM2 (Protein recA OS=Prochlorococcus marinus (strain MIT 9215) GN=recA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.822e-36
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL   +  I  +FG+ S+ RLG A    VET  +G LTLDLALGGG PKGR+VE++GPESSGKTTL LHAIAEVQK GG A  VDAEHA DP Y+ +L
Sbjct:   13 EKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASL 114

HSP 2 Score: 47.3654 bits (111), Expect = 1.822e-36
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDVENL+V   D GEMALEI D++ RS A+DL
Sbjct:  115 GVDVENLLVSQPDTGEMALEIVDQLIRSSAVDL 147

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_PROMP	2.862e-37	59.09	Protein recA OS=Prochlorococcus marinus subsp. pas...	[more]
RECA_NOSP7	3.730e-37	65.35	Protein recA OS=Nostoc punctiforme (strain ATCC 29...	[more]
RECA_PROMT	1.073e-36	57.01	Protein recA OS=Prochlorococcus marinus (strain NA...	[more]
RECA_PROM1	1.073e-36	57.01	Protein recA OS=Prochlorococcus marinus (strain NA...	[more]
RECA_PROM4	1.074e-36	55.74	Protein recA OS=Prochlorococcus marinus (strain MI...	[more]
RECA_CAUCR	1.399e-36	64.08	Protein recA OS=Caulobacter crescentus GN=recA PE=...	[more]
RECA_CAUCN	1.399e-36	64.08	Protein recA OS=Caulobacter crescentus (strain NA1...	[more]
RECA_PROMS	1.822e-36	60.78	Protein recA OS=Prochlorococcus marinus (strain AS...	[more]
RECA_PROM9	1.822e-36	60.78	Protein recA OS=Prochlorococcus marinus (strain MI...	[more]
RECA_PROM2	1.822e-36	60.78	Protein recA OS=Prochlorococcus marinus (strain MI...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC