DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_TERTT (Protein recA OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=recA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.396e-29
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I+  FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE Q+ GG    VDAEHA DP Y+  L
Sbjct:    4 NKEKALQAALQQIDRQFGKGTVMRMGDKELEAIPAVSTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAEAQRKGGTCAFVDAEHALDPIYAAKL 106

HSP 2 Score: 43.1282 bits (100), Expect = 1.396e-29
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++LIV   D GE ALE+AD + RSGAID+
Sbjct:  107 GVNVDDLIVSQPDTGEQALEVADMLVRSGAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PORGI (Protein recA OS=Porphyromonas gingivalis GN=recA PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.396e-29
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 2

Query:  362 RALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +AL  A   I  +FGK ++  +G+     V   PSG + LDLALG GG P+GRI+EI+GPESSGKTTLA+HAIAE QK GG A ++DAEHAFD +Y++ L
Sbjct:   16 QALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKL 115

HSP 2 Score: 41.5874 bits (96), Expect = 1.396e-29
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V+NL +   DNGE ALEIA+++ RS A+D+
Sbjct:  116 GVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDI 148

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PORG3 (Protein recA OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=recA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.396e-29
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 2

Query:  362 RALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +AL  A   I  +FGK ++  +G+     V   PSG + LDLALG GG P+GRI+EI+GPESSGKTTLA+HAIAE QK GG A ++DAEHAFD +Y++ L
Sbjct:   16 QALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKL 115

HSP 2 Score: 41.5874 bits (96), Expect = 1.396e-29
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V+NL +   DNGE ALEIA+++ RS A+D+
Sbjct:  116 GVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDI 148

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_GEOSL (Protein recA OS=Geobacter sulfurreducens GN=recA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.397e-29
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R++A++ A++ I   FGK ++ RLG A  AL  V   P+G L+LDLALG GG+P+GRI+EI+GPESSGKTTLALH  AE QK+GG A  VDAEHA D  Y++ L
Sbjct:    4 EREKAIELALSQIEKQFGKGAIMRLG-ADEALPDVAAIPTGSLSLDLALGVGGVPRGRIIEIYGPESSGKTTLALHIAAEAQKMGGIAAFVDAEHALDIGYARKL 107

HSP 2 Score: 38.5058 bits (88), Expect = 1.397e-29
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV  ++L+V   D GE ALEIA+ + RSGA+D+
Sbjct:  108 GVKTDDLLVSQPDTGEQALEIAEMLVRSGAVDV 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORHE (Protein recA OS=Borrelia hermsii GN=recA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.817e-29
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            L+R++A++ A   I   FGK S+ ++G S  G  +E+  SG + LD A+G GG P+GRI+EIFGPESSGKTTL L AIAEVQK GG A  +DAEHA DP+Y+KAL
Sbjct:   16 LNREKAIELARVQIEKDFGKGSLIKMGESPVGKGIESISSGSILLDEAIGVGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKNGGIAAFIDAEHALDPAYAKAL 120

HSP 2 Score: 37.7354 bits (86), Expect = 1.817e-29
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+++ L +   D GE ALEIA+ + RSG +DL
Sbjct:  118 KALGVNIDELWISQPDTGEQALEIAEYLIRSGGVDL 153

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORHD (Protein recA OS=Borrelia hermsii (strain DAH) GN=recA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.817e-29
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            L+R++A++ A   I   FGK S+ ++G S  G  +E+  SG + LD A+G GG P+GRI+EIFGPESSGKTTL L AIAEVQK GG A  +DAEHA DP+Y+KAL
Sbjct:   16 LNREKAIELARVQIEKDFGKGSLIKMGESPVGKGIESISSGSILLDEAIGVGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKNGGIAAFIDAEHALDPAYAKAL 120

HSP 2 Score: 37.7354 bits (86), Expect = 1.817e-29
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+++ L +   D GE ALEIA+ + RSG +DL
Sbjct:  118 KALGVNIDELWISQPDTGEQALEIAEYLIRSGGVDL 153

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DESAH (Protein recA OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=recA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.818e-29
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALXRGCRE 676
            ++ +A+  AM  I   FGK S+ +LG+     V    +G L LD ALG GG P+GR++EI+GPESSGKTTLALHA+AE Q+ GG A  +DAEHA D +Y++ L   C E
Sbjct:    6 EKDKAIQTAMGQIERQFGKGSIMKLGAREIQAVPIISTGSLALDKALGVGGFPRGRVIEIYGPESSGKTTLALHAVAEAQRQGGIAAFIDAEHALDVAYARRLGVNCDE 114

HSP 2 Score: 39.6614 bits (91), Expect = 1.818e-29
Identity = 17/38 (44.74%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            +  GV+ + L+V   D GE ALEI D + RSGA+D+ +
Sbjct:  106 RRLGVNCDELLVSQPDTGEQALEIVDMLVRSGAVDIII 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEA6 (Protein recA OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=recA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.818e-29
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ RAL AA+  I   FGK ++ RLG      +E   +G LT+D+ALG GGLP GR+VEI+GPESSGKTTL L AIAE QK+G     VDAEHA DP Y+  L
Sbjct:    4 NKTRALTAALGQIEKQFGKGAIMRLGDNQAMDIEAISTGSLTIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQAIAEAQKMGKTCAFVDAEHALDPIYAGKL 106

HSP 2 Score: 40.4318 bits (93), Expect = 1.818e-29
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++++L+V   D GE ALEI D + RSGA+D+
Sbjct:  107 GVNIDDLLVSQPDTGEQALEICDMLVRSGAVDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DEIGD (Protein recA OS=Deinococcus geothermalis (strain DSM 11300) GN=recA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.365e-29
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R +A++ AM  I  +FGK S+ RLG+     V+   +G L+LDLALG GG+P+GRI EI+GPES GKTTLAL  IA+ Q+ GG    +DAEHA DP Y+++L
Sbjct:   17 ERLKAIETAMTQIEKAFGKGSIMRLGAESKLDVQAVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSL 119

HSP 2 Score: 39.2762 bits (90), Expect = 2.365e-29
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+ + L+V   DNGE ALEI + + RSGAID+
Sbjct:  120 GVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 152

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DICNV (Protein recA OS=Dichelobacter nodosus (strain VCS1703A) GN=recA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.366e-29
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL A +  ++  FGK +V RLG    A  ++   +G LTLD+ALG GGLPKGRIVEI+GPESSGKTT+ LH IAE QK GG A  +DAEHA DP Y++ L
Sbjct:    4 EQKKALTAVLTQLDKQFGKGTVMRLGEQVAAHDIQAISTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMMLHVIAEAQKNGGTAAFIDAEHALDPIYARKL 107

HSP 2 Score: 36.965 bits (84), Expect = 2.366e-29
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+ ++L V   D GE ALEI D + RSGA D+
Sbjct:  108 GVNTDDLYVTQPDTGEQALEICDALVRSGAFDV 140

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_TERTT	1.396e-29	54.37	Protein recA OS=Teredinibacter turnerae (strain AT...	[more]
RECA_PORGI	1.396e-29	56.00	Protein recA OS=Porphyromonas gingivalis GN=recA P...	[more]
RECA_PORG3	1.396e-29	56.00	Protein recA OS=Porphyromonas gingivalis (strain A...	[more]
RECA_GEOSL	1.397e-29	57.14	Protein recA OS=Geobacter sulfurreducens GN=recA P...	[more]
RECA_BORHE	1.817e-29	57.14	Protein recA OS=Borrelia hermsii GN=recA PE=3 SV=1	[more]
RECA_BORHD	1.817e-29	57.14	Protein recA OS=Borrelia hermsii (strain DAH) GN=r...	[more]
RECA_DESAH	1.818e-29	50.46	Protein recA OS=Desulfobacterium autotrophicum (st...	[more]
RECA_PSEA6	1.818e-29	55.34	Protein recA OS=Pseudoalteromonas atlantica (strai...	[more]
RECA_DEIGD	2.365e-29	52.43	Protein recA OS=Deinococcus geothermalis (strain D...	[more]
RECA_DICNV	2.366e-29	55.77	Protein recA OS=Dichelobacter nodosus (strain VCS1...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC