DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_THEM4 (Protein recA OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=recA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.366e-29
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++  L  A+  I  +FGK S+  LG       +ET  SG + +D+A G GG P+GRIVEI+GPESSGKTT+ALHAIA  QK GG A  VDAEHA DP Y+K L
Sbjct:    7 KKEVLKKAIGKIEKTFGKGSIMFLGEENAVQNIETISSGSVAIDIASGVGGYPRGRIVEIYGPESSGKTTIALHAIASAQKNGGIAAFVDAEHALDPVYAKNL 109

HSP 2 Score: 45.8246 bits (107), Expect = 2.366e-29
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GVDVENL++   D GE ALEI D + RS A+DL
Sbjct:  107 KNLGVDVENLLIAQPDYGEQALEIVDELVRSNAVDL 142

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RALSO (Protein recA OS=Ralstonia solanacearum GN=recA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.080e-29
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA+  I   FGK S+ ++G A    V+   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG    +DAEHA D +Y+  L
Sbjct:   13 EKQKALAAALAQIEKQFGKGSIMKMGDAEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVTYADKL 115

HSP 2 Score: 40.0466 bits (92), Expect = 3.080e-29
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV V +L++   D GE ALEIAD + RSG++DL
Sbjct:  116 GVKVPDLLISQPDTGEQALEIADALVRSGSVDL 148

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAMJD (Protein recA OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=recA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.082e-29
Identity = 55/103 (53.40%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++++LDAA+  ++ +FGK ++ RLG      +++  +G + LDLALG GG+PKGRIVEI+GPESSGKTTL LH IAE QK GG    +DAEHA D  Y+K L
Sbjct:    4 NKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGIPKGRIVEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNL 106

HSP 2 Score: 38.5058 bits (88), Expect = 3.082e-29
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+ ++L V   D GE ALEI + + RSGA+DL
Sbjct:  104 KNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDL 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_THETH (Protein recA OS=Thermus thermophilus GN=recA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.082e-29
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++AL+ A+  I   FGK +V RLG      V+  P+G L LDLALG GG+P+GRIVEI+GPES GKTTLAL  IA+ Q+ GG A  VDAEHA DP Y++ L
Sbjct:    5 KRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRL 106

HSP 2 Score: 40.0466 bits (92), Expect = 3.082e-29
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE+L+V   D GE ALEI + + RSGA+D+
Sbjct:  107 GVQVEDLLVSQPDTGEQALEIVELLARSGAVDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_THET8 (Protein recA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=recA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.082e-29
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++AL+ A+  I   FGK +V RLG      V+  P+G L LDLALG GG+P+GRIVEI+GPES GKTTLAL  IA+ Q+ GG A  VDAEHA DP Y++ L
Sbjct:    5 KRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRL 106

HSP 2 Score: 40.0466 bits (92), Expect = 3.082e-29
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE+L+V   D GE ALEI + + RSGA+D+
Sbjct:  107 GVQVEDLLVSQPDTGEQALEIVELLARSGAVDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_THET2 (Protein recA OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=recA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.082e-29
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++AL+ A+  I   FGK +V RLG      V+  P+G L LDLALG GG+P+GRIVEI+GPES GKTTLAL  IA+ Q+ GG A  VDAEHA DP Y++ L
Sbjct:    5 KRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRL 106

HSP 2 Score: 40.0466 bits (92), Expect = 3.082e-29
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE+L+V   D GE ALEI + + RSGA+D+
Sbjct:  107 GVQVEDLLVSQPDTGEQALEIVELLARSGAVDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RALME (Protein recA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=recA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.011e-29
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL---VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK S+ RLG   G +   ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG    +DAEHA D  Y+  L
Sbjct:   13 EKQKALAAALSQIEKQFGKGSIMRLGD--GEIEQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKL 116

HSP 2 Score: 43.1282 bits (100), Expect = 4.011e-29
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDV NL++   D GE ALEI D + RSG+IDL
Sbjct:  117 GVDVGNLLISQPDTGEQALEITDALVRSGSIDL 149

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RALEU (Protein recA OS=Ralstonia eutropha GN=recA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.011e-29
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL---VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK S+ RLG   G +   ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG    +DAEHA D  Y+  L
Sbjct:   13 EKQKALAAALSQIEKQFGKGSIMRLGD--GEIEQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKL 116

HSP 2 Score: 43.1282 bits (100), Expect = 4.011e-29
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDV NL++   D GE ALEI D + RSG+IDL
Sbjct:  117 GVDVGNLLISQPDTGEQALEITDALVRSGSIDL 149

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLP8 (Protein recA OS=Chlorobaculum parvum (strain NCIB 8327) GN=recA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.012e-29
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R + L+ A+  +   FGK S+ RLG     + V+   +G + LD ALG GG P+GR+ EI+GPESSGKTTLALHAIAE QK GG A LVDAEHAFDP+Y++ L
Sbjct:   19 RLKQLNLAIETLEKQFGKGSIMRLGDDSAVMHVKAISTGSMALDYALGVGGFPRGRVTEIYGPESSGKTTLALHAIAEAQKEGGIAALVDAEHAFDPTYARKL 121

HSP 2 Score: 37.3502 bits (85), Expect = 4.012e-29
Identity = 15/33 (45.45%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+ +L+V   ++GE AL I + + RSGA+D+
Sbjct:  122 GVDINSLLVSQPESGEQALSIVETLVRSGAVDI 154

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_SYNAS (Protein recA OS=Syntrophus aciditrophicus (strain SB) GN=recA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.012e-29
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR +A+D A++ I   FGK S+ RLG+      +   P+G L+LD+ALG GG+P+GRI+EIFGPES GKTTLALH IAE QK  G A  +DAEHA D SY++ +
Sbjct:    6 DRAKAVDLAISQIERQFGKGSIMRLGAKERIEDIAVIPTGALSLDIALGIGGVPRGRIIEIFGPESGGKTTLALHIIAEAQKRNGLAAFIDAEHALDVSYARKI 109

HSP 2 Score: 38.891 bits (89), Expect = 4.012e-29
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+ ++L++   D GE ALEIA+ + RSGA+D+
Sbjct:  110 GVNTDDLLISQPDTGEQALEIAETLVRSGALDI 142

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_THEM4	2.366e-29	54.37	Protein recA OS=Thermosipho melanesiensis (strain ...	[more]
RECA_RALSO	3.080e-29	53.40	Protein recA OS=Ralstonia solanacearum GN=recA PE=...	[more]
RECA_CAMJD	3.082e-29	53.40	Protein recA OS=Campylobacter jejuni subsp. doylei...	[more]
RECA_THETH	3.082e-29	55.88	Protein recA OS=Thermus thermophilus GN=recA PE=3 ...	[more]
RECA_THET8	3.082e-29	55.88	Protein recA OS=Thermus thermophilus (strain HB8 /...	[more]
RECA_THET2	3.082e-29	55.88	Protein recA OS=Thermus thermophilus (strain HB27 ...	[more]
RECA_RALME	4.011e-29	52.83	Protein recA OS=Ralstonia metallidurans (strain CH...	[more]
RECA_RALEU	4.011e-29	52.83	Protein recA OS=Ralstonia eutropha GN=recA PE=3 SV...	[more]
RECA_CHLP8	4.012e-29	56.31	Protein recA OS=Chlorobaculum parvum (strain NCIB ...	[more]
RECA_SYNAS	4.012e-29	54.81	Protein recA OS=Syntrophus aciditrophicus (strain ...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC