DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLL2 (Protein recA OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=recA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.222e-29
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 2

Query:  362 RALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + L+ A++ +   FGK ++ RLG     + V++  +G +TLD ALG GGLP+GR+ EI+GPESSGKTTLALH IAE QK GG A +VDAEHAFDPSY++ L
Sbjct:   21 KQLNLAVDALEKQFGKGAIMRLGDGSAVMQVQSISTGSMTLDFALGVGGLPRGRVAEIYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPSYARKL 121

HSP 2 Score: 35.039 bits (79), Expect = 5.222e-29
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+  L++   ++GE AL I + + RSGA+D+
Sbjct:  122 GVDINALLISQPESGEQALTIVETLVRSGAVDV 154

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCMS (Protein recA OS=Mycoplasma mycoides subsp. mycoides SC GN=recA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.223e-29
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 2

Query:  362 RALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSY 646
            + L  A+ +I   FGK S+  LG +    VETF SG L LD ALG GG PKGRI+EI+GPESSGKTTL+LHAI E+QKLGG A  +DAEH+ DP Y
Sbjct:   22 KELKEAIKEIEKMFGKGSIMVLGQSDNLNVETFSSGSLLLDNALGIGGYPKGRIIEIYGPESSGKTTLSLHAICEIQKLGGIAAFIDAEHSLDPKY 117

HSP 2 Score: 35.4242 bits (80), Expect = 5.223e-29
Identity = 15/35 (42.86%), Postives = 22/35 (62.86%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            G+D   L+V   DNGE AL+I + +  S +IDL +
Sbjct:  122 GIDTNKLLVSQPDNGEQALDILEMLINSNSIDLII 156

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLTE (Protein recA OS=Chlorobium tepidum GN=recA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.223e-29
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R + L+ A+  +   FGK ++ RLG     + V+   +G + LD ALG GGLP+GR+ EI+GPESSGKTTLALHAIAE QK GG A LVDAEHAFDP+Y++ L
Sbjct:   18 RLKQLNLAIETLEKQFGKGAIMRLGDDSAVMHVQVISTGSMALDYALGVGGLPRGRVTEIYGPESSGKTTLALHAIAEAQKNGGIAALVDAEHAFDPTYARKL 120

HSP 2 Score: 36.1946 bits (82), Expect = 5.223e-29
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+  L+V   ++GE AL I + + RSGA+D+
Sbjct:  121 GVDINALLVSQPESGEQALSIVETLVRSGAVDI 153

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MAGMG (Protein recA OS=Magnetospirillum magnetotacticum GN=recA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.224e-29
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 2

Query:  350 LDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +DRQ+AL+AA++ I  +FGK S+ +LG     +  E   +  L LD+ALG GG+P+GRI+E++GPESSGKTTLALH IAE QK GG    VDAEHA DPSY++ L
Sbjct:    1 MDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVETEVVSTRILGLDVALGIGGVPRGRIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKL 105

HSP 2 Score: 33.4982 bits (75), Expect = 5.224e-29
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 3

Query:  669 VENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            ++ L++   D GE ALEIAD + R GA+D+
Sbjct:  108 LDELLISEPDAGEQALEIADTLVRPGAVDV 137

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAMJR (Protein recA OS=Campylobacter jejuni (strain RM1221) GN=recA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.224e-29
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++++LDAA+  ++ +FGK ++ RLG      +++  +G + LDLALG GG+PKGRI+EI+GPESSGKTTL LH IAE QK GG    +DAEHA D  Y+K L
Sbjct:    4 NKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNL 106

HSP 2 Score: 38.5058 bits (88), Expect = 5.224e-29
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+ ++L V   D GE ALEI + + RSGA+DL
Sbjct:  104 KNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDL 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAMJJ (Protein recA OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=recA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.224e-29
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++++LDAA+  ++ +FGK ++ RLG      +++  +G + LDLALG GG+PKGRI+EI+GPESSGKTTL LH IAE QK GG    +DAEHA D  Y+K L
Sbjct:    4 NKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNL 106

HSP 2 Score: 38.5058 bits (88), Expect = 5.224e-29
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+ ++L V   D GE ALEI + + RSGA+DL
Sbjct:  104 KNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDL 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAMJE (Protein recA OS=Campylobacter jejuni GN=recA PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.224e-29
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++++LDAA+  ++ +FGK ++ RLG      +++  +G + LDLALG GG+PKGRI+EI+GPESSGKTTL LH IAE QK GG    +DAEHA D  Y+K L
Sbjct:    4 NKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNL 106

HSP 2 Score: 38.5058 bits (88), Expect = 5.224e-29
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+ ++L V   D GE ALEI + + RSGA+DL
Sbjct:  104 KNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDL 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAMJ8 (Protein recA OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=recA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.224e-29
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++++LDAA+  ++ +FGK ++ RLG      +++  +G + LDLALG GG+PKGRI+EI+GPESSGKTTL LH IAE QK GG    +DAEHA D  Y+K L
Sbjct:    4 NKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNL 106

HSP 2 Score: 38.5058 bits (88), Expect = 5.224e-29
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ GV+ ++L V   D GE ALEI + + RSGA+DL
Sbjct:  104 KNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDL 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PASMU (Protein recA OS=Pasteurella multocida GN=recA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.797e-29
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK S+ +LG      VE   +G L+LD+ALG GGLP GRIVEIFGPESSGKTTL L  IA+ QK G     +DAEHA DP Y+  L
Sbjct:    6 EKNKALAAALGQIEKQFGKGSIMKLGDTQALDVEAVSTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKL 108

HSP 2 Score: 42.3578 bits (98), Expect = 6.797e-29
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V  L+V   DNGE ALEI D + RSGA+D+ +
Sbjct:  109 GVNVNELLVSQPDNGEQALEICDALVRSGAVDVII 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CYTH3 (Protein recA OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=recA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.797e-29
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL   ++ +  ++GK +V +L       V    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL++H IAE QK GG A  +DAEHAFD +Y++ L
Sbjct:   13 EKLKALQLTIDKLEKTYGKGTVMKLSDEVVMDVPVISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLSMHCIAEAQKAGGIAAFIDAEHAFDKTYAEKL 115

HSP 2 Score: 44.669 bits (104), Expect = 6.797e-29
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G+D  NL++   DNGE ALEIA+ + RSGAID+
Sbjct:  116 GIDTTNLLISQPDNGEQALEIAEHLIRSGAIDI 148

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_CHLL2	5.222e-29	56.44	Protein recA OS=Chlorobium limicola (strain DSM 24...	[more]
RECA_MYCMS	5.223e-29	60.42	Protein recA OS=Mycoplasma mycoides subsp. mycoide...	[more]
RECA_CHLTE	5.223e-29	56.31	Protein recA OS=Chlorobium tepidum GN=recA PE=3 SV...	[more]
RECA_MAGMG	5.224e-29	56.19	Protein recA OS=Magnetospirillum magnetotacticum G...	[more]
RECA_CAMJR	5.224e-29	52.43	Protein recA OS=Campylobacter jejuni (strain RM122...	[more]
RECA_CAMJJ	5.224e-29	52.43	Protein recA OS=Campylobacter jejuni subsp. jejuni...	[more]
RECA_CAMJE	5.224e-29	52.43	Protein recA OS=Campylobacter jejuni GN=recA PE=1 ...	[more]
RECA_CAMJ8	5.224e-29	52.43	Protein recA OS=Campylobacter jejuni subsp. jejuni...	[more]
RECA_PASMU	6.797e-29	54.37	Protein recA OS=Pasteurella multocida GN=recA PE=3...	[more]
RECA_CYTH3	6.797e-29	51.46	Protein recA OS=Cytophaga hutchinsonii (strain ATC...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC