DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_VIBFM (Protein recA OS=Vibrio fischeri (strain MJ11) GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.799e-29
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK S+ +LG      VET  +G L+LD+ALG GGLP GRIVEIFGPESSGKTTL L  IA  Q+ G     +DAEHA DP Y+K L
Sbjct:    4 NKKKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKL 106

HSP 2 Score: 41.5874 bits (96), Expect = 6.799e-29
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+++ L+V   D GE ALEI D + RSGA+D+
Sbjct:  104 KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_VIBF1 (Protein recA OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.799e-29
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK S+ +LG      VET  +G L+LD+ALG GGLP GRIVEIFGPESSGKTTL L  IA  Q+ G     +DAEHA DP Y+K L
Sbjct:    4 NKKKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKL 106

HSP 2 Score: 41.5874 bits (96), Expect = 6.799e-29
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+++ L+V   D GE ALEI D + RSGA+D+
Sbjct:  104 KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCMY (Protein recA OS=Mycoplasma mycoides GN=recA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.800e-29
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 2

Query:  362 RALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + L  A+ +I   FGK S+  LG +    +ETF SG L LD ALG GG PKGRI+EI+GPESSGKTTL+LHAI EVQKLGG A  +DAEH+ +P Y + L
Sbjct:   23 KELKEAIKEIEKMFGKGSIMVLGQSDNLNIETFSSGSLLLDNALGIGGYPKGRIIEIYGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTL 122

HSP 2 Score: 35.039 bits (79), Expect = 6.800e-29
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G+D   L+V   DNGE AL+I + +  S +IDL
Sbjct:  123 GIDTNKLLVSQPDNGEQALDILEMLINSNSIDL 155

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECAM_DICDI (Mitochondrial DNA repair protein recA homolog OS=Dictyostelium discoideum GN=recA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.815e-29
Identity = 67/166 (40.36%), Postives = 96/166 (57.83%), Query Frame = 2

Query:  167 MKTHLCLLSISSSPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +K +   L  + + L    +    +   SK S + K+ KK   + DG++      S  S+      +++  + ++  SFGK ++ +LGS      VE  PSG + LD+ALG GGLPKGR+ EIFGPESSGKTTLALH IA+ QK GGN   +DAEHA +P ++  L
Sbjct:   27 LKINSFSLCNTKTNLFTNKTNINLYNNYSKSSKSGKKSKKDEDDEDGEIE----TSKTSKKSASSSSMENVLKELEKSFGKGTLMKLGSQFSTQKVEVIPSGSMGLDIALGVGGLPKGRVTEIFGPESSGKTTLALHVIAQAQKAGGNCTFIDAEHALNPQWAARL 188

HSP 2 Score: 33.113 bits (74), Expect = 8.815e-29
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRS 743
            GV+++ L V   DNGE ALEI D + RS
Sbjct:  189 GVNLDELFVSQPDNGEQALEIVDSLLRS 216

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_EHRRW (Protein recA OS=Ehrlichia ruminantium (strain Welgevonden) GN=recA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.849e-29
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD A++ I  +FG+ ++ +L       +++ P+G + LD ALG GG PKGRI+EIFGPESSGKTTLALH IAE QK GGN   +DAEHA D  Y++ L
Sbjct:   10 DRQKALDNAISQIEKAFGRGAIMKLKQGAIEKIDSIPTGSIALDTALGIGGFPKGRIIEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKL 112

HSP 2 Score: 31.9574 bits (71), Expect = 8.849e-29
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+  +LIV   D GE AL I + +  SGAID+
Sbjct:  113 GVNTGDLIVSQPDTGEQALHIVEYLICSGAIDV 145

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_EHRRG (Protein recA OS=Ehrlichia ruminantium (strain Gardel) GN=recA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.849e-29
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD A++ I  +FG+ ++ +L       +++ P+G + LD ALG GG PKGRI+EIFGPESSGKTTLALH IAE QK GGN   +DAEHA D  Y++ L
Sbjct:   10 DRQKALDNAISQIEKAFGRGAIMKLKQGAIEKIDSIPTGSIALDTALGIGGFPKGRIIEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKL 112

HSP 2 Score: 31.9574 bits (71), Expect = 8.849e-29
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+  +LIV   D GE AL I + +  SGAID+
Sbjct:  113 GVNTGDLIVSQPDTGEQALHIVEYLICSGAIDV 145

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MANSM (Protein recA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=recA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.851e-29
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALXRGCRE 676
            ++ +AL AA+  I   FGK ++ +LG      VE+  +G + LD+ALG GGLP GR+VEIFGPESSGKTTL L  IA+ QK G     +DAEHA DP Y+  L    +E
Sbjct:    6 EKSKALAAALGQIEKQFGKGAIMKLGDTQALDVESISTGSIGLDVALGIGGLPMGRVVEIFGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKE 114

HSP 2 Score: 44.669 bits (104), Expect = 8.851e-29
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GVDV+ L+V   DNGE ALEI D + RSGA+D+ +
Sbjct:  109 GVDVKELLVSQPDNGEQALEICDALVRSGAVDVII 143

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_METCL (Protein recA OS=Methylomonas clara GN=recA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.855e-29
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAG-GALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R+G A  G  ++   +G L LD+ALG GGLP+GRI+EI+GPESSGKTTL L AIAE+QKLGG A  +DA+ A DP Y+  L
Sbjct:    4 NKSKALAAALSQIEKQFGKGSIMRMGDADIGEDLQVVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLTLSAIAEMQKLGGVAAFIDADDALDPQYASKL 107

HSP 2 Score: 39.6614 bits (91), Expect = 8.855e-29
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V  L++   D GE ALEIAD + RSG++D+
Sbjct:  108 GVNVPELLISQPDTGEQALEIADMLVRSGSVDI 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_HAEDU (Protein recA OS=Haemophilus ducreyi GN=recA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.151e-28
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++AL AA+  I   FGK S+ RLG      +E   +G + LD ALG GGLP GRIVEI+GPESSGKTTL L  IA+ Q++G     +DAEHA DP Y++ L
Sbjct:   21 KEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDAALGIGGLPMGRIVEIYGPESSGKTTLTLSVIAQAQRIGKTCAFIDAEHALDPVYARKL 122

HSP 2 Score: 43.5134 bits (101), Expect = 1.151e-28
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GVD++ L++   DNGE ALEI D + RSGA+D+ +
Sbjct:  123 GVDIDALLISQPDNGEQALEICDALVRSGAVDVII 157

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ANAMM (Protein recA OS=Anaplasma marginale (strain St. Maries) GN=recA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.152e-28
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+ALDAA++ I  +FG+ ++ +L       +++  +G + LD ALG GGLPKGRIVEIFGPESSGKTTLALH IAE QK GGN   +DAEHA D  Y++ L
Sbjct:   13 EKQKALDAAISQIERAFGRGAIMKLKQHPAEKMDSVSTGSIALDAALGIGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKL 115

HSP 2 Score: 33.4982 bits (75), Expect = 1.152e-28
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V +LIV   D GE AL I + +  SGAID+
Sbjct:  116 GVNVGDLIVSQPDTGEQALHIVEYLVCSGAIDV 148

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_VIBFM	6.799e-29	55.34	Protein recA OS=Vibrio fischeri (strain MJ11) GN=r...	[more]
RECA_VIBF1	6.799e-29	55.34	Protein recA OS=Vibrio fischeri (strain ATCC 70060...	[more]
RECA_MYCMY	6.800e-29	58.00	Protein recA OS=Mycoplasma mycoides GN=recA PE=3 S...	[more]
RECAM_DICDI	8.815e-29	40.36	Mitochondrial DNA repair protein recA homolog OS=D...	[more]
RECA_EHRRW	8.849e-29	55.34	Protein recA OS=Ehrlichia ruminantium (strain Welg...	[more]
RECA_EHRRG	8.849e-29	55.34	Protein recA OS=Ehrlichia ruminantium (strain Gard...	[more]
RECA_MANSM	8.851e-29	49.54	Protein recA OS=Mannheimia succiniciproducens (str...	[more]
RECA_METCL	8.855e-29	54.81	Protein recA OS=Methylomonas clara GN=recA PE=3 SV...	[more]
RECA_HAEDU	1.151e-28	51.96	Protein recA OS=Haemophilus ducreyi GN=recA PE=3 S...	[more]
RECA_ANAMM	1.152e-28	55.34	Protein recA OS=Anaplasma marginale (strain St. Ma...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC