DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ANAMF (Protein recA OS=Anaplasma marginale (strain Florida) GN=recA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.152e-28
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+ALDAA++ I  +FG+ ++ +L       +++  +G + LD ALG GGLPKGRIVEIFGPESSGKTTLALH IAE QK GGN   +DAEHA D  Y++ L
Sbjct:   13 EKQKALDAAISQIERAFGRGAIMKLKQHPAEKMDSVSTGSIALDAALGIGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKL 115

HSP 2 Score: 33.4982 bits (75), Expect = 1.152e-28
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V +LIV   D GE AL I + +  SGAID+
Sbjct:  116 GVNVGDLIVSQPDTGEQALHIVEYLVCSGAIDV 148
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RALEH (Protein recA OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=recA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.152e-28
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK S+ RLG       ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG    +DAEHA D SY+  L
Sbjct:   13 EKQKALAAALSQIEKQFGKGSIMRLGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYANKL 116

HSP 2 Score: 39.2762 bits (90), Expect = 1.152e-28
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V +L++   D GE ALEI D + RSG+IDL
Sbjct:  117 GVNVGDLLISQPDTGEQALEITDALVRSGSIDL 149
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NEIMF (Protein recA OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=recA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-28
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRL-GSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I  SFGK ++ ++ GS     +E   +G L LDLALG GGLP+GRIVEIFGPESSGKTTL L A+A+ QK GG    VDAEHAFDP Y++ L
Sbjct:    4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKL 107

HSP 2 Score: 37.7354 bits (86), Expect = 1.153e-28
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE L +   D GE ALEI D + RSG ID+
Sbjct:  108 GVKVEELYLSQPDTGEQALEICDTLVRSGGIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NEIMB (Protein recA OS=Neisseria meningitidis serogroup B GN=recA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-28
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRL-GSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I  SFGK ++ ++ GS     +E   +G L LDLALG GGLP+GRIVEIFGPESSGKTTL L A+A+ QK GG    VDAEHAFDP Y++ L
Sbjct:    4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKL 107

HSP 2 Score: 37.7354 bits (86), Expect = 1.153e-28
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE L +   D GE ALEI D + RSG ID+
Sbjct:  108 GVKVEELYLSQPDTGEQALEICDTLVRSGGIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NEIMA (Protein recA OS=Neisseria meningitidis serogroup A GN=recA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-28
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRL-GSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I  SFGK ++ ++ GS     +E   +G L LDLALG GGLP+GRIVEIFGPESSGKTTL L A+A+ QK GG    VDAEHAFDP Y++ L
Sbjct:    4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKL 107

HSP 2 Score: 37.7354 bits (86), Expect = 1.153e-28
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE L +   D GE ALEI D + RSG ID+
Sbjct:  108 GVKVEELYLSQPDTGEQALEICDTLVRSGGIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NEIGO (Protein recA OS=Neisseria gonorrhoeae GN=recA PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-28
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRL-GSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I  SFGK ++ ++ GS     +E   +G L LDLALG GGLP+GRIVEIFGPESSGKTTL L A+A+ QK GG    VDAEHAFDP Y++ L
Sbjct:    4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKL 107

HSP 2 Score: 37.7354 bits (86), Expect = 1.153e-28
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE L +   D GE ALEI D + RSG ID+
Sbjct:  108 GVKVEELYLSQPDTGEQALEICDTLVRSGGIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NEIG2 (Protein recA OS=Neisseria gonorrhoeae (strain NCCP11945) GN=recA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-28
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRL-GSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I  SFGK ++ ++ GS     +E   +G L LDLALG GGLP+GRIVEIFGPESSGKTTL L A+A+ QK GG    VDAEHAFDP Y++ L
Sbjct:    4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKL 107

HSP 2 Score: 37.7354 bits (86), Expect = 1.153e-28
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE L +   D GE ALEI D + RSG ID+
Sbjct:  108 GVKVEELYLSQPDTGEQALEICDTLVRSGGIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_NEIG1 (Protein recA OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=recA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-28
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRL-GSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I  SFGK ++ ++ GS     +E   +G L LDLALG GGLP+GRIVEIFGPESSGKTTL L A+A+ QK GG    VDAEHAFDP Y++ L
Sbjct:    4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKL 107

HSP 2 Score: 37.7354 bits (86), Expect = 1.153e-28
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE L +   D GE ALEI D + RSG ID+
Sbjct:  108 GVKVEELYLSQPDTGEQALEICDTLVRSGGIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_HAHCH (Protein recA OS=Hahella chejuensis (strain KCTC 2396) GN=recA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.153e-28
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R++AL AA++ I   FGK +V R+G     ++ +  +G L LD+ALG GGLP GRIVEI+GPESSGKTTL L  IAE Q+ G     VDAEHA DP Y++ L
Sbjct:    4 NRKKALTAALSQIERQFGKGAVMRMGEQPREIIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVIAEAQRQGKTCAFVDAEHALDPIYAEKL 106

HSP 2 Score: 41.9726 bits (97), Expect = 1.153e-28
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+++ L+V   D GE ALEIAD + RSGA+D+ +
Sbjct:  107 GVNIDQLLVSQPDTGEQALEIADMLVRSGAVDVII 141
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_COXBU (Protein recA OS=Coxiella burnetii GN=recA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.153e-28
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R  AL+AA++ I   FGK SV RLG  G    ++   +G L LD+ALG GGLP+GRI+EI+GPE+SGKTTLAL  IA  Q++GG A  VDAEHA D  Y+  L
Sbjct:    3 NRSNALNAALSQIERQFGKGSVMRLGDPGLIPDIDVISTGSLGLDIALGVGGLPRGRIIEIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKL 106

HSP 2 Score: 42.3578 bits (98), Expect = 1.153e-28
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV VE+L+V   D GE ALEI D + RSGA+DL
Sbjct:  107 GVKVEDLLVSQPDTGEQALEITDMLVRSGAVDL 139
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_ANAMF1.152e-2855.34Protein recA OS=Anaplasma marginale (strain Florid... [more]
RECA_RALEH1.152e-2853.85Protein recA OS=Ralstonia eutropha (strain ATCC 17... [more]
RECA_NEIMF1.153e-2857.69Protein recA OS=Neisseria meningitidis serogroup C... [more]
RECA_NEIMB1.153e-2857.69Protein recA OS=Neisseria meningitidis serogroup B... [more]
RECA_NEIMA1.153e-2857.69Protein recA OS=Neisseria meningitidis serogroup A... [more]
RECA_NEIGO1.153e-2857.69Protein recA OS=Neisseria gonorrhoeae GN=recA PE=3... [more]
RECA_NEIG21.153e-2857.69Protein recA OS=Neisseria gonorrhoeae (strain NCCP... [more]
RECA_NEIG11.153e-2857.69Protein recA OS=Neisseria gonorrhoeae (strain ATCC... [more]
RECA_HAHCH1.153e-2853.40Protein recA OS=Hahella chejuensis (strain KCTC 23... [more]
RECA_COXBU1.153e-2854.81Protein recA OS=Coxiella burnetii GN=recA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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